CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.249.167.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.249.167.S1_at CV229731 hypothetical protein - 4e-13 At3g09440 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) S.X. H.G.
0.15 25.3 PtpAffx.759.2.S1_at CV274211 hypothetical protein - 1e-7 At3g62830 AUD1 S.X. H.G.
0.11 18.1 PtpAffx.201198.1.S1_at pmrna2371 - - 1e-8 At1g49960 xanthine/uracil permease family protein S.X. H.G.
0.08 12.9 PtpAffx.224412.1.S1_at pmrna42911 hypothetical protein - 5e-27 At5g03260 LAC11 (laccase 11) S.X. H.G.
0.06 9.8 PtpAffx.5888.1.A1_a_at CV248932 hypothetical protein - 6e-60 At3g09820 ADK1 (adenosine kinase 1) S.X. H.G.
0.04 6.9 Ptp.373.1.A1_at CK088690 hypothetical protein - 4e-1 At2g28470 BGAL8 (beta-galactosidase 8) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.0 98.4 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.4 97.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3 95.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 0 726 PtpAffx.249.10.S1_x_at CV272832 hypothetical protein - 0 At3g09440 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) C.G. S.X.
0.37 7e-105 381 PtpAffx.249.225.S1_a_at CV260633 hypothetical protein - 1e-23 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.28 3e-98 359 Ptp.2048.3.A1_a_at CV272308 hypothetical protein - 2e-8 At4g00752 UBX domain-containing protein C.G. S.X.
0.22 2e-71 270 Ptp.2604.1.S1_x_at CV262072 hypothetical protein - 1e-162 At3g12580 HSP70 (heat shock protein 70) C.G. S.X.
0.42 6e-53 208 PtpAffx.50373.1.A1_at CV246681 - - 5e-1 At5g38440 self-incompatibility protein-related C.G. S.X.
0.37 1e-41 171 PtpAffx.112867.1.A1_at BP932564 hypothetical protein - 6e-43 At3g12580 HSP70 (heat shock protein 70) C.G. S.X.
0.27 1e-38 161 Ptp.4789.1.S1_s_at CF231305 hypothetical protein - 2e-18 At3g12580 HSP70 (heat shock protein 70) C.G. S.X.
0.25 4e-32 139 PtpAffx.249.739.A1_at CV255845 - - 5e-1 At5g11990 proline-rich family protein C.G. S.X.
0.10 8e-6 52 PtpAffx.29169.1.A1_at DN486312 - - 2e-16 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 4e-13 75 Arabidopsis thaliana At3g09440 820102 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) F:ATP binding;P:protein folding, response to cadmium ion, response to heat;C:in 7 components;OBMFPVA - - - C.G. S.X.
0.24 2e-22 107 Glycine max Gma.11115.1.S1_s_at AI856377 - - 7e-68 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.31 1e-30 133 Hordeum vulgare Contig319_at Contig319 - - 2e-48 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.21 9e-22 105 Oryza sativa Os.38581.1.S1_s_at - - - 0 C.G. S.X.
0.22 3e-29 129 Triticum aestivum Ta.15522.1.S1_at CA485306 - - 2e-71 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.23 4e-44 176 Vitis vinifera 1609949_at CF373330 similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding - 0 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.27 1e-26 119 Zea mays Zm.3081.2.A1_a_at CF626654 heat shock protein1 - 4e-13 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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