Gene omics information

Query gene ID	PtpAffx.249.158.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.249.158.S1_a_at	CV234195	hypothetical protein	-	9e-23	At4g20150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.38755.1.A1_at	CV260007	hypothetical protein	-	7e-21	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.159533.1.A1_at	CV269395	hypothetical protein	-	2e-15	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.13315.1.S1_at	CX173115	-	-	1e+0	At2g18000	TAF14 (TBP-associated factor 14)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	96.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	9e-104	377	Ptp.5371.1.S1_a_at	CV250717	hypothetical protein	-	4e-16	At4g20150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	2e-92	339	PtpAffx.249.514.S1_at	CX658577	hypothetical protein	-	5e-15	At4g20150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.80379.1.S1_at	BU834486	-	-	1e+0	At5g39720	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.218294.1.S1_at	pmrna33855	hypothetical protein	-	6e-13	At5g52910	ATIM (TIMELESS)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.217245.1.S1_s_at	pmrna32432	hypothetical protein	-	9e-7	At5g58130	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.217245.1.S1_at	pmrna32432	hypothetical protein	-	9e-7	At5g58130	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	32	PtpAffx.69823.1.A1_at	CV229595	hypothetical protein	-	4e-24	At2g40730	HEAT repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.63341.1.S1_at	CK318907	hypothetical protein	-	8e-9	At2g31140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.63341.1.S1_a_at	CK318907	hypothetical protein	-	8e-9	At2g31140	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	9e-23	107	Arabidopsis thaliana	At4g20150	827761	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	6e-28	125	Glycine max	Gma.14457.2.S1_at	CA783225	-	-	2e-13	At4g20150	unknown protein	C.G.	S.X.	Please select
0.14	1e-14	79	Hordeum vulgare	Contig4401_at	Contig4401	-	-	1e-19	At4g20150	unknown protein	C.G.	S.X.	Please select
0.16	1e-17	91	Oryza sativa	Os.11511.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	9e-14	77	Triticum aestivum	TaAffx.113249.1.S1_at	CA616940	-	-	1e-20	At4g20150	unknown protein	C.G.	S.X.	Please select
0.11	9e-8	56	Vitis vinifera	1612461_at	CB969270	hypothetical protein LOC100257379	-	1e-1	At3g10220	tubulin folding cofactor B	C.G.	S.X.	Please select
0.15	4e-14	77	Zea mays	Zm.1178.1.A1_at	CK370647	hypothetical protein LOC100276162	-	2e-20	At4g20150	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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