Gene omics information

Query gene ID PtpAffx.249.113.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4471.9PtpAffx.249.113.S1_atCV280925hypothetical protein-6e+0At5g23140NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)S.X.H.G.
0.7794.9PtpAffx.3707.1.S1_s_atBP933241hypothetical protein-4e-2At2g19590ACO1 (ACC OXIDASE 1)S.X.H.G.
0.7794.9Ptp.4062.1.A1_atCV245827hypothetical protein-4e-2At4g24805methyltransferaseS.X.H.G.
0.6791.1PtpAffx.3707.2.S1_s_atCV268421--2e+0At1g15190-S.X.H.G.
0.4774.6PtpAffx.19246.1.S1_atCV245825hypothetical protein-2e-32At2g35940BLH1 (BEL1-LIKE HOMEODOMAIN 1)S.X.H.G.
0.4369.7PtpAffx.204923.1.S1_x_atpmrna9738hypothetical protein-4e-12At5g01180PTR5 (PEPTIDE TRANSPORTER 5)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.397.7GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.097.5GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.797.3GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.996.5GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.896.4GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.796.3GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.696.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.395.8GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
4.295.6GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.995.1GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.523e-70266Ptp.4111.3.S1_s_atBI132307hypothetical protein-6e-2At1g56220dormancy/auxin associated family proteinC.G.S.X.
0.284e-57222PtpAffx.249.51.A2_atCV243226hypothetical protein-2e-1At1g56220dormancy/auxin associated family proteinC.G.S.X.
0.284e-57222PtpAffx.249.51.A1_a_atCX179492hypothetical protein-2e-1At1g56220dormancy/auxin associated family proteinC.G.S.X.
0.162e-50200PtpAffx.249.758.S1_atCV239036--7e-13At4g38740ROC1 (ROTAMASE CYP 1)C.G.S.X.
0.242e-43176PtpAffx.249.861.A1_atCV274980hypothetical protein-9e-1At4g19150ankyrin repeat family proteinC.G.S.X.
0.251e-1791Ptp.4111.2.S1_atCA823916hypothetical protein-9e-2At1g56220dormancy/auxin associated family proteinC.G.S.X.
0.034e-240PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinC.G.S.X.
0.024e-240PtpAffx.983.1.A1_atCX172753hypothetical protein-5e-10At5g64180unknown proteinC.G.S.X.
0.024e-240PtpAffx.9731.1.S1_atCV255821hypothetical protein-1e+1At5g44582unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e+032Arabidopsis thalianaAt5g23140832378NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).---C.G.S.X.
0.124e-550Glycine maxGma.15235.1.S1_atBE822208--8e-12At1g56220dormancy/auxin associated family proteinC.G.S.X.
0.023e+032Hordeum vulgareContig11481_atContig11481--1e+0At2g26670TED4 (REVERSAL OF THE DET PHENOTYPE 4)C.G.S.X.
0.071e-242Oryza sativaOs09g0437500AK099618.1-Dormancyauxin associated family protein3e+0At1g12810proline-rich family proteinC.G.S.X.
0.064e-136Triticum aestivumTa.6148.3.S1_atCA680203--4e+0At3g02220unknown proteinC.G.S.X.
0.058e-650Vitis vinifera1621185_s_atCA816880hypothetical protein LOC100245909-1e-4At1g56220dormancy/auxin associated family proteinC.G.S.X.
0.033e+032Zea maysZm.15280.1.A1_s_atBM351351pathogenesis related protein-1-4e+0At2g32310-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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