CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.24872.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.24872.1.A1_at CV242999 hypothetical protein - 7e-33 At3g24200 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen S.X. H.G.
0.56 83.9 PtpAffx.207472.1.S1_at pmrna14832 hypothetical protein - 1e-2 At5g23950 C2 domain-containing protein S.X. H.G.
0.54 80.8 PtpAffx.512.1.A1_at CX184282 hypothetical protein - 2e+0 At5g28610 - S.X. H.G.
0.53 80.5 PtpAffx.163470.1.S1_s_at CK107131 hypothetical protein - 2e-40 At1g03960 calcium-binding EF hand family protein S.X. H.G.
0.49 75.7 PtpAffx.207526.1.S1_s_at pmrna14940 hypothetical protein - 3e-10 At3g10650 - S.X. H.G.
0.47 74.6 PtpAffx.207844.1.S1_at pmrna15577 hypothetical protein - 3e-18 At1g16280 DEAD/DEAH box helicase, putative S.X. H.G.
0.46 73.7 PtpAffx.205056.1.S1_at pmrna10016 hypothetical protein - 7e-10 At1g08030 unknown protein S.X. H.G.
0.45 72.3 PtpAffx.125795.1.A1_s_at CV237305 hypothetical protein - 7e-3 At4g25500 ATRSP35 S.X. H.G.
0.44 71.9 PtpAffx.60077.1.S1_at BU837127 - - 2e-30 At3g10050 OMR1 (L-O-METHYLTHREONINE RESISTANT 1) S.X. H.G.
0.43 69.7 PtpAffx.47391.1.S1_s_at BU812138 hypothetical protein - 4e-50 At3g01540 DRH1 (DEAD BOX RNA HELICASE 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.6 99.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.6 99.4 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.1 99.0 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7 85.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-3 42 PtpAffx.200549.1.S1_at pmrna1091 hypothetical protein - 5e-3 At5g55750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 4e-1 36 PtpAffx.53019.1.S1_s_at BU894473 hypothetical protein - 2e-30 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) C.G. S.X.
0.01 4e-1 36 PtpAffx.222709.1.S1_at pmrna40297 hypothetical protein - 2e-78 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) C.G. S.X.
0.01 4e-1 36 PtpAffx.222021.1.S1_at pmrna39212 hypothetical protein - 6e-5 At1g53830 ATPME2 C.G. S.X.
0.01 4e-1 36 PtpAffx.206805.1.S1_at pmrna13510 hypothetical protein - 6e-5 At1g53830 ATPME2 C.G. S.X.
0.01 2e+0 34 PtpAffx.210111.1.S1_at pmrna19923 hypothetical protein - 8e-24 At1g10390 nucleoporin family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.207220.1.S1_at pmrna14323 hypothetical protein - 5e-16 At1g56145 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.201421.1.S1_at pmrna2806 hypothetical protein - 2e-21 At1g59660 nucleoporin family protein C.G. S.X.
0.05 2e+0 34 PtpAffx.200478.1.S1_at pmrna966 hypothetical protein - 1e+0 At4g28930 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 7e-33 141 Arabidopsis thaliana At3g24200 822006 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA - - - C.G. S.X.
0.04 2e+0 34 Glycine max Gma.17128.1.S1_at AW432300 - - 4e-2 At1g21560 unknown protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare Contig24547_at Contig24547 - - 1e+0 At4g26290 unknown protein C.G. S.X.
0.15 4e-8 59 Oryza sativa Os.56320.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.80593.1.S1_at CA694902 - - 9e-1 At2g44340 VQ motif-containing protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1621724_at CB341760 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.12263.1.S1_at BQ528944 - - 4e+0 At5g16110 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage