Gene omics information

Query gene ID	PtpAffx.24775.2.A1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.24775.2.A1_x_at	CV272777	hypothetical protein	-	1e-41	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.65	88.6	Ptp.1963.1.S1_at	CV269324	f-box family protein	-	4e-11	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.4558.2.A1_at	CV234584	hypothetical protein	-	2e-24	At1g22910	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.2322.1.A1_x_at	CV276448	tubulin alpha-2 chain	-	1e-102	At5g19770	TUA3	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.891.3.S1_a_at	CF233972	tubulin, beta chain	-	4e-153	At5g62700	TUB3	S.X.	H.G.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.6121.1.S1_at	CV269198	hypothetical protein	-	9e-3	At3g63120	CYCP1	S.X.	H.G.	Please selecteFP Browser (expression)
0.51	78.9	PtpAffx.41350.1.A1_at	CF234756	-	-	8e-17	At4g08810	SUB1	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.4693.1.S1_s_at	CK093535	hypothetical protein	-	2e-15	At2g41770	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.1897.1.S1_a_at	AY660967.1	hypothetical protein	-	4e-56	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.160487.1.A1_at	CV267400	-	-	3e-27	At1g34470	permease-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.6	99.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
18.2	99.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
17.2	99.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.1	78.0	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.1	78.0	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1895	PtpAffx.24775.2.A1_s_at	CV272777	hypothetical protein	-	1e-41	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	0	795	Ptp.801.1.S1_x_at	AY435099.1	alpha-expansin family protein	-	9e-28	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	0	795	Ptp.801.1.S1_at	AY435099.1	alpha-expansin family protein	-	9e-28	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	698	PtpAffx.24775.1.A1_at	CV274658	alpha-expansin family protein	-	2e-28	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	698	PtpAffx.24775.1.A1_x_at	CV274658	alpha-expansin family protein	-	2e-28	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	3e-43	176	PtpAffx.17914.2.A1_a_at	CV257560	hypothetical protein	-	3e-51	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	5e-42	173	PtpAffx.17914.3.A1_at	CK091997	hypothetical protein	-	1e-12	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	5e-42	173	PtpAffx.17914.3.A1_a_at	CK091997	hypothetical protein	-	1e-12	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	7e-38	159	Ptp.6422.1.A1_s_at	CV240405	hypothetical protein	-	2e-12	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	1e-41	171	Arabidopsis thaliana	At2g39700	818553	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	5e-48	192	Glycine max	GmaAffx.93176.1.S1_s_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.04	2e-5	50	Hordeum vulgare	Contig3674_at	Contig3674	-	-	1e-14	At2g37640	EXP3	C.G.	S.X.	Please select
0.10	4e-40	167	Oryza sativa	Os03g0822000	AF247164.1	-	Alpha-expansin OsEXPA7	2e-30	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	4e-20	99	Triticum aestivum	Ta.5046.1.S1_at	AY543535.1	expansin EXPA9	-	3e-24	At2g37640	EXP3	C.G.	S.X.	Please select
0.43	6e-69	260	Vitis vinifera	1608191_at	CD798831	hypothetical protein LOC100245911	-	4e-20	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please select
0.15	1e-27	123	Zea mays	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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