CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.24700.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.24700.1.A1_at CV249721 hypothetical protein - 8e-2 At4g13940 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) S.X. H.G.
0.55 82.2 PtpAffx.114566.1.A1_at CV254112 hypothetical protein - 2e-1 At2g17710 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.7042.1.S1_at BI123470 - - 2e+0 At5g40382 cytochrome-c oxidase S.X. H.G.
0.33 57.5 PtpAffx.217755.1.S1_at pmrna33144 hypothetical protein - 6e+0 At2g06530 VPS2.1 S.X. H.G.
0.25 43.6 PtpAffx.202936.1.S1_x_at pmrna5810 hypothetical protein - 1e-47 At1g79930 HSP91 S.X. H.G.
0.17 29.1 PtpAffx.5021.1.S1_at CK090757 hypothetical protein - 1e-4 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) S.X. H.G.
0.14 23.5 PtpAffx.45958.1.A1_at DN492279 hypothetical protein - 7e-55 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.3 99.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 6e-22 105 PtpAffx.116728.1.A1_at CK090789 hypothetical protein - 1e+1 At4g14365 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.30602.1.A1_at CV268363 hypothetical protein - 1e-4 At5g17800 AtMYB56 (myb domain protein 56) C.G. S.X.
0.01 5e-1 36 PtpAffx.219730.1.S1_at pmrna35744 hypothetical protein - 8e-17 At5g65490 - C.G. S.X.
0.01 5e-1 36 PtpAffx.214082.1.S1_at pmrna27419 hypothetical protein - 4e-3 At3g26850 - C.G. S.X.
0.01 5e-1 36 PtpAffx.201427.1.S1_at pmrna2820 hypothetical protein - 1e-9 At1g33240 AT-GTL1 (GT2-LIKE 1) C.G. S.X.
0.04 5e-1 36 PtpAffx.154078.1.A1_at CV230230 - - 2e+0 At2g29910 F-box family protein C.G. S.X.
0.03 5e-1 36 Ptp.7188.1.A1_at DN487986 - - 3e-1 At2g27340 - C.G. S.X.
0.02 2e+0 34 PtpAffx.75200.1.S1_at CV281216 hypothetical protein - 1e-2 At4g37260 MYB73 (MYB DOMAIN PROTEIN 73) C.G. S.X.
0.01 2e+0 34 PtpAffx.221966.1.S1_at pmrna39104 hypothetical protein - 2e-13 At2g16660 nodulin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-2 38 Arabidopsis thaliana At4g13940 827028 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. - - - C.G. S.X.
0.03 5e-1 36 Glycine max GmaAffx.50323.1.S1_at BI425540 - - 3e+0 At3g19990 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare EBro08_SQ007_B12_s_at EBro08_SQ007_B12 - - 3e+0 At2g48140 EDA4 (embryo sac development arrest 4) C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.15918.1.S1_at - - - 0 C.G. S.X.
0.03 5e+0 32 Triticum aestivum Ta.30675.1.S1_at CN010397 - - 1e+0 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1622400_at BQ796203 hypothetical protein LOC100262534 - 1e-3 At2g23390 - C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.510.1.A1_at AI692008 hypothetical protein LOC100273006 - 3e+0 At4g14380 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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