CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.24504.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 PtpAffx.24504.1.A1_at CV257320 - - 6e-1 At3g27200 plastocyanin-like domain-containing protein S.X. H.G.
0.46 73.7 PtpAffx.203623.1.S1_at pmrna7181 NBS resistance protein - 6e-1 At2g19530 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.205503.1.S1_at pmrna10878 hypothetical protein - 7e-1 At1g68660 - S.X. H.G.
0.27 47.1 PtpAffx.217244.1.S1_at pmrna32431 hypothetical protein - 5e-5 At3g13040 myb family transcription factor S.X. H.G.
0.25 43.6 PtpAffx.216629.1.S1_at pmrna31540 hypothetical protein - 4e-1 At5g28390 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.04 6.9 PtpAffx.203411.1.S1_at pmrna6785 hypothetical protein - 2e-1 At5g58490 cinnamoyl-CoA reductase family S.X. H.G.
0.03 5.2 PtpAffx.159867.1.A1_at CV256777 - - 1e+0 At1g50000 methyltransferase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.6 99.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
8.6 98.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4 95.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 38 Ptp.6317.1.S1_at CV261179 hypothetical protein - 3e-6 At3g56130 biotin/lipoyl attachment domain-containing protein C.G. S.X.
0.02 2e-1 36 PtpAffx.4980.3.A1_at CV261487 hypothetical protein - 7e-23 At3g22970 unknown protein C.G. S.X.
0.03 2e-1 36 PtpAffx.40295.1.S1_s_at DN486863 hypothetical protein - 2e+0 At5g22140 pyridine nucleotide-disulphide oxidoreductase family protein C.G. S.X.
0.01 2e-1 36 PtpAffx.223417.1.S1_at pmrna41408 hypothetical protein - 2e-28 At3g23900 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 2e-1 36 PtpAffx.18236.1.S1_at CV272788 hypothetical protein - 1e-10 At1g09645 unknown protein C.G. S.X.
0.05 8e-1 34 PtpAffx.213255.1.S1_s_at pmrna25930 type-a response regulator - 3e-37 At2g41310 ATRR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.01 8e-1 34 PtpAffx.203586.1.S1_at pmrna7118 hypothetical protein - 5e-96 At5g06120 Ran-binding protein, putative C.G. S.X.
0.01 8e-1 34 PtpAffx.200093.1.S1_at pmrna171 hypothetical protein - 3e-82 At5g06120 Ran-binding protein, putative C.G. S.X.
0.04 8e-1 34 PtpAffx.137810.1.S1_at DN500748 hypothetical protein - 1e+0 At5g16650 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 34 Arabidopsis thaliana At3g27200 822339 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF - - - C.G. S.X.
0.07 3e+0 32 Glycine max HgAffx.10745.1.S1_at CB377756 - - 1e+0 At4g15920 - C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HVSMEg0011P04r2_at HVSMEg0011P04r2 - - 4e+0 At5g19210 DEAD/DEAH box helicase, putative C.G. S.X.
0.02 5e+0 32 Oryza sativa Os.5410.1.S1_at - - - 0 C.G. S.X.
0.05 1e-2 40 Triticum aestivum TaAffx.31643.1.S1_at CA611048 - - 1e+0 At5g19030 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.07 2e-1 34 Vitis vinifera 1611178_at CF204492.1 - - 2e+1 At5g17090 - C.G. S.X.
0.04 4e+0 30 Zea mays Zm.9200.1.A1_at BM336786 - - 4e+0 At3g45600 TET3 (TETRASPANIN3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage