Gene omics information

Query gene ID PtpAffx.24353.1.A1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9PtpAffx.24353.1.A1_a_atCV274454hypothetical protein-3e-1At1g26250proline-rich extensin, putativeS.X.H.G.
0.6791.1PtpAffx.55461.1.S1_atDN503438--7e-3At3g09270ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)S.X.H.G.
0.5078.6PtpAffx.117121.1.S1_s_atCX167944hypothetical protein-5e-3At4g02850phenazine biosynthesis PhzC/PhzF family proteinS.X.H.G.
0.4067.0PtpAffx.209212.1.S1_atpmrna18217hypothetical protein-2e-3At4g02850phenazine biosynthesis PhzC/PhzF family proteinS.X.H.G.
0.3357.5PtpAffx.89823.2.A1_a_atDN487789ABC transporter family, pleiotropic drug resistance protein-2e-11At1g15210PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)S.X.H.G.
0.2238.3PtpAffx.85312.1.S1_atCV269394--2e-4At2g30140UDP-glucoronosyl/UDP-glucosyl transferase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.297.6GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
5.196.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.996.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
4.495.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.495.9GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.794.7GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.594.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.831e-121436PtpAffx.24353.2.A1_x_atCV263592hypothetical protein-2e-1At2g32650-C.G.S.X.
0.315e-28125PtpAffx.653.1.S1_a_atCV227680--7e-2At4g08370proline-rich extensin-like family proteinC.G.S.X.
0.248e-21101PtpAffx.653.2.A1_x_atCV253724--2e-6At1g26250proline-rich extensin, putativeC.G.S.X.
0.215e-1995PtpAffx.205601.1.S1_atpmrna11055hypothetical protein-7e-5At1g26240proline-rich extensin-like family proteinC.G.S.X.
0.133e-1479PtpAffx.653.13.S1_atCV273014--3e-1At5g27810sequence-specific DNA binding / transcription factorC.G.S.X.
0.133e-1479PtpAffx.653.15.S1_atCV253530--8e-2At1g26250proline-rich extensin, putativeC.G.S.X.
0.152e-1273PtpAffx.653.26.A1_x_atCV257633--2e-1At1g76930ATEXT4 (EXTENSIN 4)C.G.S.X.
0.201e-1067PtpAffx.653.3.S1_x_atCV253577--2e-2At1g26240proline-rich extensin-like family proteinC.G.S.X.
0.063e-550PtpAffx.653.14.A1_s_atCX173034hypothetical protein-3e-4At1g70470unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.053e-136Arabidopsis thalianaAt1g26250839166proline-rich extensin, putativeF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA---C.G.S.X.
0.112e-654Glycine maxGmaAffx.89473.2.S1_s_atCK605927hydroxyproline-rich glycoprotein-2e-2At1g49490leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.051e-136Hordeum vulgareHD13L20r_s_atHD13L20r--9e-1At3g46613RTFL4 (ROTUNDIFOLIA LIKE 4)C.G.S.X.
0.032e+034Oryza sativaOsAffx.29538.1.S1_at---0C.G.S.X.
0.044e+032Triticum aestivumTaAffx.135168.7.S1_atCA622116--3e+0At5g43185Expressed proteinC.G.S.X.
0.118e-546Vitis vinifera1615789_atBQ795769--1e-3At1g26250proline-rich extensin, putativeC.G.S.X.
0.032e+032Zea maysZm.6887.1.A1_atAI065555hypothetical protein LOC100194370-1e+0At3g25940transcription factor S-II (TFIIS) domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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