Gene omics information

Query gene ID	PtpAffx.24245.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.6	PtpAffx.24245.1.A1_at	CV267867	-	-	5e-1	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.214503.1.S1_at	pmrna28205	hypothetical protein	-	3e-5	At2g31141	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.205291.1.S1_at	pmrna10493	hypothetical protein	-	2e+0	At3g26770	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.213065.1.S1_at	pmrna25567	hypothetical protein	-	1e-30	At4g00750	dehydration-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.4862.1.S1_s_at	BU871535	hypothetical protein	-	7e-89	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.203852.1.S1_at	pmrna7607	hypothetical protein	-	1e-1	At3g54620	BZIP25 (BASIC LEUCINE ZIPPER 25)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.79508.1.S1_at	DN492236	hypothetical protein	-	4e-89	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.68287.1.S1_at	CF228395	-	-	4e-53	At5g19780	TUA5	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.152061.1.S1_at	CK116361	tubulin alpha-6 chain /// tubulin alpha-8 chain	-	6e-149	At5g19780	TUA5	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.211320.1.S1_s_at	pmrna22196	f-box family protein	-	2e+0	At4g10330	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.1	99.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
17.5	99.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
10.5	99.0	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.0	98.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.9	97.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-3	44	PtpAffx.224303.1.S1_at	pmrna42728	hypothetical protein	-	1e-9	At4g15560	CLA1 (CLOROPLASTOS ALTERADOS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	42	PtpAffx.225061.1.S1_s_at	pmrna44143	hypothetical protein	-	6e-33	At5g11380	DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.221791.1.S1_s_at	pmrna38844	hypothetical protein	-	5e-54	At1g72040	deoxynucleoside kinase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.221791.1.S1_at	pmrna38844	hypothetical protein	-	5e-54	At1g72040	deoxynucleoside kinase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.18180.1.A1_at	CV257976	hypothetical protein	-	2e-11	At1g72040	deoxynucleoside kinase family	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.210829.1.S1_at	pmrna21262	hypothetical protein	-	1e+0	At1g71970	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.203243.1.S1_at	pmrna6426	hypothetical protein	-	8e+0	At5g63063	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.47989.1.S1_at	DN492180	hypothetical protein	-	4e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.216179.1.S1_x_at	pmrna30797	hypothetical protein	-	3e-1	At2g39510	nodulin MtN21 family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-1	36	Arabidopsis thaliana	At3g21500	821704	1-deoxy-D-xylulose-5-phosphate synthase	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.55	2e-34	147	Glycine max	GmaAffx.15794.1.S1_at	BM731379	-	-	8e-5	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	C.G.	S.X.	Please select
0.03	9e-1	34	Hordeum vulgare	Contig22697_at	Contig22697	-	-	9e+0	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	C.G.	S.X.	Please select
0.03	6e-2	40	Oryza sativa	Os07g0190000	AK100909.1	-	1-deoxy-D-xylulose 5-phosphate synthase 2precursor	6e-3	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Triticum aestivum	TaAffx.32074.1.S1_at	CA626968	-	-	3e-1	At1g06475	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609732_at	CF415377	hypothetical protein LOC100253369	-	4e-3	At3g15870	oxidoreductase	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.11947.1.A1_at	BM382038	hypothetical protein LOC100277020	-	4e+0	At4g35410	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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