Gene omics information

Query gene ID PtpAffx.24245.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9499.6PtpAffx.24245.1.A1_atCV267867--5e-1At3g215001-deoxy-D-xylulose-5-phosphate synthaseS.X.H.G.
0.5078.6PtpAffx.214503.1.S1_atpmrna28205hypothetical protein-3e-5At2g31141unknown proteinS.X.H.G.
0.5078.6PtpAffx.205291.1.S1_atpmrna10493hypothetical protein-2e+0At3g26770short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
0.4268.6PtpAffx.213065.1.S1_atpmrna25567hypothetical protein-1e-30At4g00750dehydration-responsive family proteinS.X.H.G.
0.3863.7Ptp.4862.1.S1_s_atBU871535hypothetical protein-7e-89At3g27240cytochrome c1, putativeS.X.H.G.
0.3661.6PtpAffx.203852.1.S1_atpmrna7607hypothetical protein-1e-1At3g54620BZIP25 (BASIC LEUCINE ZIPPER 25)S.X.H.G.
0.3052.0PtpAffx.79508.1.S1_atDN492236hypothetical protein-4e-89At5g05920DHS (DEOXYHYPUSINE SYNTHASE)S.X.H.G.
0.2950.5PtpAffx.68287.1.S1_atCF228395--4e-53At5g19780TUA5S.X.H.G.
0.2950.5PtpAffx.152061.1.S1_atCK116361tubulin alpha-6 chain /// tubulin alpha-8 chain-6e-149At5g19780TUA5S.X.H.G.
0.2645.2PtpAffx.211320.1.S1_s_atpmrna22196f-box family protein-2e+0At4g10330glycine-rich proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.199.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
17.599.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
10.599.0GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.098.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
5.997.4GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.995.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
3.092.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.490.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-344PtpAffx.224303.1.S1_atpmrna42728hypothetical protein-1e-9At4g15560CLA1 (CLOROPLASTOS ALTERADOS 1)C.G.S.X.
0.021e-242PtpAffx.225061.1.S1_s_atpmrna44143hypothetical protein-6e-33At5g11380DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)C.G.S.X.
0.022e-138PtpAffx.221791.1.S1_s_atpmrna38844hypothetical protein-5e-54At1g72040deoxynucleoside kinase familyC.G.S.X.
0.022e-138PtpAffx.221791.1.S1_atpmrna38844hypothetical protein-5e-54At1g72040deoxynucleoside kinase familyC.G.S.X.
0.032e-138PtpAffx.18180.1.A1_atCV257976hypothetical protein-2e-11At1g72040deoxynucleoside kinase familyC.G.S.X.
0.016e-136PtpAffx.210829.1.S1_atpmrna21262hypothetical protein-1e+0At1g71970unknown proteinC.G.S.X.
0.026e-136PtpAffx.203243.1.S1_atpmrna6426hypothetical protein-8e+0At5g63063-C.G.S.X.
0.023e+034PtpAffx.47989.1.S1_atDN492180hypothetical protein-4e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)C.G.S.X.
0.023e+034PtpAffx.216179.1.S1_x_atpmrna30797hypothetical protein-3e-1At2g39510nodulin MtN21 family proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.065e-136Arabidopsis thalianaAt3g215008217041-deoxy-D-xylulose-5-phosphate synthaseEncodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.---C.G.S.X.
0.552e-34147Glycine maxGmaAffx.15794.1.S1_atBM731379--8e-5At3g215001-deoxy-D-xylulose-5-phosphate synthaseC.G.S.X.
0.039e-134Hordeum vulgareContig22697_atContig22697--9e+0At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)C.G.S.X.
0.036e-240Oryza sativaOs07g0190000AK100909.1-1-deoxy-D-xylulose 5-phosphate synthase 2precursor6e-3At3g215001-deoxy-D-xylulose-5-phosphate synthaseC.G.S.X.
0.022e+034Triticum aestivumTaAffx.32074.1.S1_atCA626968--3e-1At1g06475unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1609732_atCF415377hypothetical protein LOC100253369-4e-3At3g15870oxidoreductaseC.G.S.X.
0.023e+032Zea maysZm.11947.1.A1_atBM382038hypothetical protein LOC100277020-4e+0At4g35410clathrin adaptor complex small chain family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage