CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.2376.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.2376.1.S1_at CV241004 hypothetical protein - 6e-11 At1g01300 aspartyl protease family protein S.X. H.G.
0.61 87.0 Ptp.4024.2.A1_at CV275984 hypothetical protein - 2e-75 At3g22890 APS1 (ATP SULFURYLASE 1) S.X. H.G.
0.57 84.2 PtpAffx.121254.1.A1_at CV249707 hypothetical protein - 6e-21 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) S.X. H.G.
0.53 80.5 PtpAffx.210362.1.S1_s_at pmrna20368 hypothetical protein - 4e-1 At4g27585 band 7 family protein S.X. H.G.
0.50 78.6 Ptp.7707.1.S1_s_at DN498505 hypothetical protein - 6e-20 At4g03965 protein binding / zinc ion binding S.X. H.G.
0.40 67.0 PtpAffx.205458.1.S1_at pmrna10789 hypothetical protein - 1e-5 At1g33080 MATE efflux family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
13.6 99.4 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
10.1 99.0 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 1215 Ptp.7531.1.S1_at BU825748 hypothetical protein - 1e-17 At1g01300 aspartyl protease family protein C.G. S.X.
0.44 0 708 PtpAffx.2376.2.A1_s_at BP934123 hypothetical protein - 2e-13 At1g01300 aspartyl protease family protein C.G. S.X.
0.01 3e-1 38 PtpAffx.249.373.A1_s_at CV282889 hypothetical protein - 4e-9 At5g38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) C.G. S.X.
0.01 3e-1 38 PtpAffx.249.25.A1_s_at CV283699 hypothetical protein - 2e-7 At2g47400 CP12-1 C.G. S.X.
0.01 3e-1 38 PtpAffx.213135.1.S1_at pmrna25701 GRAS family transcription factor - 8e-3 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.02 3e-1 38 PtpAffx.200327.1.S1_at pmrna650 hypothetical protein - 1e-1 At5g12300 C2 domain-containing protein C.G. S.X.
0.02 1e+0 36 PtpAffx.31130.1.A1_at CV246210 hypothetical protein - 4e+0 At5g11820 - C.G. S.X.
0.01 1e+0 36 PtpAffx.224296.1.S1_at pmrna42716 hypothetical protein - 4e-3 At3g53240 AtRLP45 (Receptor Like Protein 45) C.G. S.X.
0.01 1e+0 36 PtpAffx.224293.1.S1_x_at pmrna42709 hypothetical protein - 8e-3 At3g53240 AtRLP45 (Receptor Like Protein 45) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-11 69 Arabidopsis thaliana At1g01300 839375 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO - - - C.G. S.X.
0.13 3e-26 121 Glycine max Gma.18097.1.S1_at CD411966 - - 7e-17 At1g01300 aspartyl protease family protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HW08E11u_s_at HW08E11u - - 9e+0 At4g21366 ATP binding / protein tyrosine kinase C.G. S.X.
0.02 7e+0 34 Oryza sativa Os09g0469600 AK058776.1 - Hypothetical protein 2e+0 At2g17300 unknown protein C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.78488.1.S1_at CA731809 - - 4e-3 At1g12630 DNA binding / transcription activator/ transcription factor C.G. S.X.
0.04 2e-5 50 Vitis vinifera 1615659_at CF373840 hypothetical protein LOC100245075 - 2e-2 At1g01300 aspartyl protease family protein C.G. S.X.
0.01 2e+1 30 Zea mays ZmAffx.635.1.A1_at AI715063 - - 1e+1 At2g25570 binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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