CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.23528.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.23528.1.S1_at CV228036 hypothetical protein - 6e-106 At5g05200 ABC1 family protein S.X. H.G.
0.73 93.6 Ptp.4058.1.A1_s_at DN484986 - - 5e-7 At1g21680 - S.X. H.G.
0.44 71.9 Ptp.2593.1.S1_s_at CK093742 hypothetical protein - 1e-7 At5g60750 CAAX amino terminal protease family protein S.X. H.G.
0.40 67.0 Ptp.2850.1.S1_at DN493728 hypothetical protein - 2e-46 At1g11720 ATSS3 (starch synthase 3) S.X. H.G.
0.40 67.0 Ptp.2208.1.S1_s_at CK089346 hypothetical protein - 9e-11 At3g47060 ftsh7 (FtsH protease 7) S.X. H.G.
0.30 52.0 PtpAffx.139342.1.S1_at CN520206 hypothetical protein - 4e-1 At3g32090 transcription factor-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.2 97.6 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7 96.3 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4 94.0 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-159 563 PtpAffx.221646.1.S1_at pmrna38630 hypothetical protein - 5e-33 At5g05200 ABC1 family protein C.G. S.X.
0.16 1e-61 238 PtpAffx.139538.1.S1_at DN499819 - - 1e-38 At5g05200 ABC1 family protein C.G. S.X.
0.01 6e-2 40 PtpAffx.201096.1.S1_at pmrna2165 hypothetical protein - 2e-4 At1g08300 - C.G. S.X.
0.02 6e-2 40 PtpAffx.123170.1.S1_at CV236141 hypothetical protein - 8e-31 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) C.G. S.X.
0.01 9e-1 36 PtpAffx.213286.1.S1_at pmrna25980 hypothetical protein - 7e-2 At2g18840 integral membrane Yip1 family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.127926.1.A1_at CV239445 hypothetical protein - 2e-2 At3g52490 heat shock protein-related C.G. S.X.
0.02 3e+0 34 PtpAffx.69444.1.A1_at CV257148 - - 8e-2 At5g13910 LEP (LEAFY PETIOLE) C.G. S.X.
0.02 3e+0 34 PtpAffx.5015.1.A1_at CF228047 actin related protein - 1e-4 At5g56180 ATARP8 (ACTIN-RELATED PROTEIN 8) C.G. S.X.
0.01 3e+0 34 PtpAffx.220031.1.S1_at pmrna36286 hypothetical protein - 6e-27 At4g18030 dehydration-responsive family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 6e-106 385 Arabidopsis thaliana At5g05200 830402 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV - - - C.G. S.X.
0.57 8e-109 395 Glycine max Gma.18030.1.S1_at CD396158 - - 2e-49 At5g05200 ABC1 family protein C.G. S.X.
0.20 1e-31 137 Hordeum vulgare Contig7015_at Contig7015 - - 1e-21 At5g05200 ABC1 family protein C.G. S.X.
0.28 2e-21 105 Oryza sativa Os07g0227800 CB620518 - ABC-1 domain containing protein 4e-18 At5g05200 ABC1 family protein C.G. S.X.
0.22 1e-33 145 Triticum aestivum Ta.11748.2.A1_a_at BJ219102 - - 4e-3 At5g05200 ABC1 family protein C.G. S.X.
0.11 7e-32 137 Vitis vinifera 1620310_at CA814688 hypothetical protein LOC100243380 - 4e-29 At5g05200 ABC1 family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.4371.1.A1_at BG517913 hypothetical protein LOC100217272 - 3e-1 At5g22240 OFP10 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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