Gene omics information

Query gene ID	PtpAffx.23095.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.158776.1.S1_s_at	CX168578	hypothetical protein	-	1e+0	At5g20060	phospholipase/carboxylesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	94.9	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	2e-95	349	PtpAffx.113365.1.S1_at	CX185316	hypothetical protein	-	4e-7	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	4e-32	139	Ptp.3167.1.S1_at	CV271489	hypothetical protein	-	1e-11	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	4e-20	99	PtpAffx.218518.1.S1_at	pmrna34170	hypothetical protein	-	3e-1	At5g50012	CPuORF36 (Conserved peptide upstream open reading frame 36)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-10	67	PtpAffx.11439.1.A1_at	BP935952	hypothetical protein	-	3e-28	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-9	63	PtpAffx.1199.1.A1_at	CK319205	hypothetical protein	-	1e-20	At5g38470	DNA repair protein RAD23, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-3	42	Ptp.2788.1.S1_at	DN488265	-	-	1e+0	At1g32760	glutaredoxin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	Ptp.4053.1.A1_at	CV235788	-	-	4e-24	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	Ptp.3849.1.S1_s_at	CA930094	hypothetical protein	-	4e-21	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	Ptp.3849.1.S1_at	CA930094	hypothetical protein	-	4e-21	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-3	44	Arabidopsis thaliana	At3g02540	821195	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	F:damaged DNA binding;P:protein modification process, proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair;C:nucleus;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-21	103	Glycine max	GmaAffx.83007.1.S1_at	BQ252622	-	-	7e-17	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HD02I19r_at	HD02I19r	-	-	7e+0	At5g46490	disease resistance protein (TIR-NBS class), putative	C.G.	S.X.	Please select
0.08	2e-1	38	Oryza sativa	Os08g0430200	AK063768.1	-	OsRAD23	6e-20	At5g38470	DNA repair protein RAD23, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	6e-9	61	Triticum aestivum	TaAffx.85097.1.S1_at	CA625641	-	-	3e-7	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please select
0.10	8e-18	89	Vitis vinifera	1607998_at	BQ793788	hypothetical protein LOC100245820	-	4e-24	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please select
0.08	2e-7	56	Zea mays	Zm.3845.1.A1_at	AI711969	hypothetical protein LOC100274222	-	2e-7	At5g38470	DNA repair protein RAD23, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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