Gene omics information

Query gene ID	PtpAffx.22865.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.22865.1.S1_at	DN484594	hypothetical protein	-	3e-5	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.114007.1.A1_s_at	CV274878	hypothetical protein	-	2e+0	At5g02090	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.211137.1.S1_at	pmrna21879	hypothetical protein	-	5e-8	At3g03540	NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.4515.1.S1_s_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.4933.1.S1_at	DN490851	hypothetical protein	-	9e-19	At3g11920	glutaredoxin-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.216800.1.S1_at	pmrna31819	hypothetical protein	-	1e-1	At3g54070	ankyrin repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.5423.1.S1_s_at	CV229504	hypothetical protein	-	3e-24	At4g11820	MVA1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.6	98.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-13	75	PtpAffx.221864.1.S1_at	pmrna38957	hypothetical protein	-	1e+0	At2g33110	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-4	46	PtpAffx.203780.1.S1_at	pmrna7465	hypothetical protein	-	1e-4	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.209698.1.S1_at	pmrna19141	hypothetical protein	-	1e-1	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.30617.1.S1_a_at	DN486396	hypothetical protein	-	1e-35	At1g18400	BEE1 (BR Enhanced Expression 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	Ptp.7783.1.S1_at	DN499174	-	-	4e+0	At3g57910	D111/G-patch domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.9718.1.S1_at	BU886551	hypothetical protein	-	2e+0	At2g19980	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.213726.1.S1_at	pmrna26788	hypothetical protein	-	4e-1	At1g10200	WLIM1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213308.1.S1_at	pmrna26030	hypothetical protein	-	1e-2	At1g79640	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.209963.1.S1_at	pmrna19650	hypothetical protein	-	3e-10	At1g28280	VQ motif-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-5	50	Arabidopsis thaliana	At3g09020	820054	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.76797.1.S1_at	BF325422	-	-	1e+0	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	Contig25988_at	Contig25988	-	-	3e+0	At3g11930	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os10g0430100	NM_196619.1	-	-	4e-2	At3g22070	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Triticum aestivum	TaAffx.32462.1.S1_at	CA594668	-	-	3e+0	At4g16220	hydrolase, acting on ester bonds	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1622073_at	CF404214	-	-	4e+0	At5g02780	In2-1 protein, putative	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.800.1.A1_at	AI770361	-	-	2e-4	At3g58580	hydrolase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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