Gene omics information

Query gene ID	PtpAffx.22769.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	71.9	PtpAffx.22769.1.A1_at	CV270424	hypothetical protein	-	1e-1	At3g51330	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.213954.1.S1_at	pmrna27198	pho1-like protein	-	3e-13	At2g03260	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.75514.1.A1_at	CV267254	-	-	8e-2	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.208898.1.S1_at	pmrna17651	hypothetical protein	-	2e-13	At1g71110	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.21021.1.S1_a_at	CV265487	hypothetical protein	-	3e-9	At2g20100	ethylene-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.3512.1.S1_at	CX176608	hypothetical protein	-	1e-9	At1g13610	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.1	98.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-8	61	PtpAffx.205198.1.S1_at	pmrna10297	hypothetical protein	-	3e-12	At5g10080	aspartyl protease family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.22177.3.A1_a_at	CV238977	-	-	3e-1	At3g58280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.37661.1.A1_at	CV243900	-	-	1e+0	At1g18570	MYB51 (MYB DOMAIN PROTEIN 51)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.28304.1.S1_at	BI139321	hypothetical protein	-	5e-1	At3g51370	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.215811.1.S1_at	pmrna30217	hypothetical protein	-	2e-1	At5g44410	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.203649.1.S1_at	pmrna7240	hypothetical protein	-	1e-1	At3g26440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	34	PtpAffx.201934.1.S1_s_at	pmrna3854	hypothetical protein	-	1e+0	At1g68862	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+1	32	PtpAffx.736.1.S1_at	CV236187	hypothetical protein	-	2e-4	At5g11420	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+1	32	PtpAffx.71445.1.A1_at	CK095044	-	-	9e-1	At4g03566	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At3g51330	824296	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-4	48	Glycine max	Gma.6804.1.S1_at	BE657581	-	-	7e+0	Atcg00050	-	C.G.	S.X.	Please select
0.05	4e-3	42	Hordeum vulgare	Contig15913_at	Contig15913	-	-	5e-3	At2g17760	aspartyl protease family protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os01g0689600	CB679841	-	Conserved hypothetical protein	6e+0	At2g39782	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e-5	50	Triticum aestivum	Ta.8829.1.S1_at	CD937232	-	-	5e-2	At5g10080	aspartyl protease family protein	C.G.	S.X.	Please select
0.10	2e-4	46	Vitis vinifera	1613138_at	CB008725	hypothetical protein LOC100250885	-	6e-4	At5g10080	aspartyl protease family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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