Gene omics information

Query gene ID	PtpAffx.22638.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.22638.1.S1_at	DN503417	hypothetical protein	-	4e-1	At5g52870	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.86948.1.S1_s_at	DN483659	hypothetical protein	-	7e-2	At3g05980	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.69940.1.A1_at	CV238070	-	-	7e+0	At5g11080	ubiquitin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.86948.1.S1_at	DN483659	-	-	7e-2	At3g05980	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.142992.1.S1_s_at	CA823082	glycosyltransferase, CAZy family GT8	-	3e-4	At1g70090	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.85220.1.S1_at	DN488269	hypothetical protein	-	7e+0	Atmg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.8	98.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.8	98.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	5e-44	178	PtpAffx.218403.1.S1_s_at	pmrna34006	hypothetical protein	-	2e+0	At1g35030	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.222677.1.S1_at	pmrna40234	SET domain protein	-	4e-11	At5g09790	ATXR5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.222677.1.S1_s_at	pmrna40234	SET domain protein /// SET domain protein	-	4e-11	At5g09790	ATXR5	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.209657.1.S1_s_at	pmrna19057	hypothetical protein	-	9e-1	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.220067.1.S1_at	pmrna36354	hypothetical protein	-	3e-7	At1g32340	NHL8	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.126640.2.S1_at	CV244347	hypothetical protein	-	1e-8	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.224705.1.S1_at	pmrna43512	hypothetical protein	-	8e-1	At5g51600	PLE (PLEIADE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.224270.1.S1_s_at	pmrna42675	cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein	-	1e-1	At2g31725	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.224274.1.S1_at	pmrna42679	cc-nbs-lrr resistance protein	-	2e+0	At5g28463	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At5g52870	835364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	HgAffx.1831.1.A1_at	CK351919	-	-	8e-1	At1g32583	-	C.G.	S.X.	Please select
0.05	7e-1	34	Hordeum vulgare	Contig12338_at	Contig12338	-	-	6e-5	At3g50550	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os11g0201200	9639.m00897	-	-	6e-1	At1g33710	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Triticum aestivum	Ta.4702.3.S1_x_at	BJ267470	-	-	2e+0	At5g62220	exostosin family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1607062_at	CF568899	-	-	3e-25	At4g21060	galactosyltransferase family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.13915.1.A1_at	AF037028.1	peroxidase R15	-	9e-3	At3g11200	AL2 (ALFIN-LIKE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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