Gene omics information

Query gene ID	PtpAffx.225905.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	93.8	PtpAffx.225905.1.S1_at	pmrna45553	hypothetical protein	-	3e-2	At2g03060	DNA binding / transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.119159.1.A1_at	DN490496	-	-	4e+0	At2g30730	serine/threonine protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.210708.1.S1_at	pmrna21002	hypothetical protein	-	1e-1	At2g04570	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.2804.1.S1_at	DN487761	hypothetical protein	-	2e-33	At1g69070	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.32509.1.S1_at	CK112880	-	-	4e+0	At5g65810	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.213916.1.S1_at	pmrna27132	hypothetical protein	-	9e-1	At3g54826	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.215966.1.S1_at	pmrna30455	hypothetical protein	-	3e+0	At5g39650	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.201423.1.S1_at	pmrna2810	hypothetical protein	-	3e-10	At3g53750	ACT3 (actin 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.20264.1.S1_at	CK103709	-	-	2e+0	At1g51160	synbindin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.216803.1.S1_at	pmrna31830	hypothetical protein	-	4e-4	At5g01860	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.3	98.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.1	98.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.7	98.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2147	PtpAffx.225905.1.S1_x_at	pmrna45553	hypothetical protein	-	3e-2	At2g03060	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.92	0	1788	PtpAffx.225039.1.S1_x_at	pmrna44077	hypothetical protein	-	4e-2	At2g03060	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.92	0	1788	PtpAffx.225039.1.S1_s_at	pmrna44077	hypothetical protein	-	4e-2	At2g03060	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.71	0	866	PtpAffx.225842.1.S1_at	pmrna45463	hypothetical protein	-	3e+0	At5g44000	glutathione S-transferase C-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	0	686	PtpAffx.224966.1.S1_at	pmrna43913	hypothetical protein	-	2e-2	At2g03060	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	9e-50	198	PtpAffx.225282.1.S1_s_at	pmrna44520	hypothetical protein	-	2e+0	At3g07440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-17	91	PtpAffx.225214.1.S1_at	pmrna44394	hypothetical protein	-	2e+0	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.4007.2.S1_at	CV233043	-	-	5e-8	At1g78150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-2	40	PtpAffx.37446.1.A1_at	CV252037	-	-	6e-2	At2g12875	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	40	Arabidopsis thaliana	At2g03060	814835	DNA binding / transcription factor	Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-4	46	Glycine max	GmaAffx.59428.1.S1_at	AI930831	-	-	1e+0	At2g17390	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	C.G.	S.X.	Please select
0.03	7e-2	38	Hordeum vulgare	HO06E11S_at	HO06E11S	-	-	2e-1	At1g72070	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	OsAffx.26902.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.65601.1.S1_at	BJ236342	-	-	1e+0	At2g01150	RHA2B (RING-H2 FINGER PROTEIN 2B)	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1620017_at	CA814172	-	-	4e-1	At3g53780	rhomboid family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	Zm.13205.3.A1_at	AI670579	-	-	6e-2	At1g04645	self-incompatibility protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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