CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.22589.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.22589.1.A1_at CV276606 hypothetical protein - 2e+0 At3g01230 unknown protein S.X. H.G.
0.67 91.1 Ptp.122.1.S1_at CK100070 - - 2e-39 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) S.X. H.G.
0.50 78.6 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein S.X. H.G.
0.40 67.0 Ptp.943.1.A1_at CK089617 hypothetical protein - 1e+0 At1g26590 zinc finger (C2H2 type) family protein S.X. H.G.
0.36 61.6 Ptp.7234.1.S1_at DN492699 - - 2e+0 At5g27750 F-box family protein S.X. H.G.
0.35 59.7 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.4 99.7 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.2 98.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 4e-104 379 PtpAffx.49974.1.A1_at CV263723 - - 1e-1 At5g60440 AGL62 (Agamous-like 62) C.G. S.X.
0.36 2e-102 373 PtpAffx.210590.1.S1_at pmrna20766 hypothetical protein - 2e-8 At5g50160 FRO8 (FERRIC REDUCTION OXIDASE 8) C.G. S.X.
0.36 2e-102 373 PtpAffx.210590.1.S1_s_at pmrna20766 hypothetical protein - 2e-8 At5g50160 FRO8 (FERRIC REDUCTION OXIDASE 8) C.G. S.X.
0.03 6e-1 36 PtpAffx.56812.1.A1_at CV251347 hypothetical protein - 5e-3 At1g67420 peptidase C.G. S.X.
0.01 6e-1 36 PtpAffx.21853.1.S1_a_at CV241254 histone deacetylase - 1e+0 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.02 6e-1 36 Ptp.2699.1.A1_s_at CV234550 vacuolar H+-translocating inorganic pyrophosphatase - 1e-100 At1g15690 AVP1 C.G. S.X.
0.01 3e+0 34 PtpAffx.224895.1.S1_at pmrna43817 hypothetical protein - 6e-67 At2g20300 ALE2 (Abnormal Leaf Shape 2) C.G. S.X.
0.01 3e+0 34 PtpAffx.220811.1.S1_s_at pmrna37251 hypothetical protein - 3e+0 At4g09467 - C.G. S.X.
0.02 3e+0 34 PtpAffx.212848.1.S1_at pmrna25143 hypothetical protein - 2e-2 At1g29460 auxin-responsive protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g01230 820795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.03 6e-1 36 Glycine max Gma.17725.1.A1_at CD412208 calreticulin-1 - 7e-1 At5g63690 - C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig23066_at Contig23066 - - 1e+0 At5g54890 RNA binding C.G. S.X.
0.03 9e-1 36 Oryza sativa Os01g0728000 AK106601.1 - Hypothetical protein 2e-1 At3g33187 - C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.24279.1.A1_x_at BQ168357 - - 3e-3 At3g13920 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) C.G. S.X.
0.02 1e-1 36 Vitis vinifera 1616176_s_at CF210508 hypothetical protein LOC100241581 - 2e-59 At3g04500 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.8621.1.A1_at BM338847 - - 4e+0 At1g75300 isoflavone reductase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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