CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.225864.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein S.X. H.G.
0.73 93.6 PtpAffx.215276.1.S1_at pmrna29369 - - 2e+0 At4g20520 RNA binding / RNA-directed DNA polymerase S.X. H.G.
0.67 91.1 PtpAffx.214817.1.S1_at pmrna28680 hypothetical protein - 1e-2 At5g53860 emb2737 (embryo defective 2737) S.X. H.G.
0.44 71.9 PtpAffx.221803.1.S1_at pmrna38862 hypothetical protein - 1e+1 At5g48480 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.217331.1.S1_at pmrna32547 hypothetical protein - 1e+0 At1g05290 transcription factor S.X. H.G.
0.17 29.1 PtpAffx.27445.1.S1_at DN495793 - - 8e-1 At3g10300 calcium-binding EF hand family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 99.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.6 98.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8 94.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8 92.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 0 648 PtpAffx.225773.1.S1_at pmrna45363 hypothetical protein - 2e+0 At5g52975 unknown protein C.G. S.X.
0.25 1e-13 77 Ptp.7588.1.S1_at DN494388 - - 1e-1 At2g37100 protamine P1 family protein C.G. S.X.
0.03 3e-2 40 PtpAffx.224570.1.S1_at pmrna43221 hypothetical protein - 6e-4 At1g12620 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 1e-1 38 PtpAffx.209953.1.S1_at pmrna19627 hypothetical protein - 7e-13 At3g15200 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 4e-1 36 PtpAffx.76535.1.A1_at CV243843 - - 2e+0 At2g46400 WRKY46 C.G. S.X.
0.03 4e-1 36 PtpAffx.65710.1.S1_s_at CA923620 hypothetical protein - 7e-12 At5g13630 GUN5 (GENOMES UNCOUPLED 5) C.G. S.X.
0.04 4e-1 36 PtpAffx.23509.1.S1_a_at CA821400 - - 2e-1 At1g23150 unknown protein C.G. S.X.
0.04 4e-1 36 PtpAffx.23509.1.S1_at CA821400 - - 2e-1 At1g23150 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.2393.1.A1_at CV244436 hypothetical protein - 6e-23 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g16500 827348 cysteine protease inhibitor family protein / cystatin family protein F:enzyme regulator activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall, vacuole;POM - - - C.G. S.X.
0.04 7e+0 32 Glycine max GmaAffx.92864.1.A1_s_at CF808589 - - 6e+0 At5g65840 - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEn0010H11f_at HVSMEn0010H11f - - 2e+1 At4g06536 - C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.11849.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.115792.1.S1_at CA615969 - - 2e-1 At3g02870 VTC4 C.G. S.X.
0.04 9e-2 36 Vitis vinifera 1617891_at CF372536 hypothetical protein LOC100268049 - 4e+0 At5g38370 zinc ion binding C.G. S.X.
0.03 8e+0 30 Zea mays Zm.9863.1.A1_a_at BM341481 hypothetical protein LOC100277372 - 2e+0 At5g48250 zinc finger (B-box type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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