Gene omics information

Query gene ID	PtpAffx.225779.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.225779.1.S1_x_at	pmrna45369	hypothetical protein	-	5e-2	At4g23910	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.207514.1.S1_at	pmrna14923	hypothetical protein	-	1e-1	At1g24250	paired amphipathic helix repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.205176.1.S1_at	pmrna10250	hypothetical protein	-	5e-1	At2g04480	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.201474.1.S1_at	pmrna2897	hypothetical protein	-	7e+0	At4g36900	RAP2.10 (related to AP2 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.205651.1.S1_at	pmrna11160	hypothetical protein	-	3e+0	At5g17840	chaperone protein dnaJ-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.101608.1.A1_at	CV258068	-	-	2e+0	At5g03060	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.218564.1.S1_at	pmrna34226	hypothetical protein	-	7e+0	At2g42130	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.215059.1.S1_at	pmrna29016	hypothetical protein	-	2e+0	At4g20370	TSF (TWIN SISTER OF FT)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.202449.1.S1_at	pmrna4903	hypothetical protein	-	4e-1	At4g10457	SCRL1 (SCR-Like 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.216859.1.S1_at	pmrna31900	hypothetical protein	-	6e-1	At3g61840	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.4	99.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
14.7	99.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.8	98.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.6	97.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	743	PtpAffx.225519.1.S1_x_at	pmrna44923	hypothetical protein	-	5e-2	At4g23910	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.91	0	714	PtpAffx.225474.1.S1_x_at	pmrna44842	hypothetical protein	-	4e+0	At5g42955	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.79	0	698	PtpAffx.225132.1.S1_s_at	pmrna44254	hypothetical protein	-	7e-2	At4g23910	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	2e-175	615	PtpAffx.222792.1.S1_at	pmrna40450	tir-nbs-lrr resistance protein	-	8e-3	At4g09430	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.92	4e-173	607	PtpAffx.225477.1.S1_x_at	pmrna44845	hypothetical protein	-	8e-1	At2g04046	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	2e-165	581	PtpAffx.225776.1.S1_s_at	pmrna45366	tir-nbs-lrr resistance protein /// hypothetical protein	-	1e-1	At2g39690	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.83	5e-157	553	PtpAffx.225878.1.S1_x_at	pmrna45522	hypothetical protein	-	2e+0	At5g11150	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	7e-150	529	PtpAffx.224392.1.S1_at	pmrna42880	tir-nbs-lrr resistance protein	-	4e-5	At4g09430	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	5e-80	297	PtpAffx.222800.1.S1_a_at	pmrna40460	tir-nbs-lrr resistance protein	-	2e+0	At5g63270	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At4g23910	828491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-1	36	Glycine max	GmaAffx.92922.1.S1_at	CF808647	-	-	2e-2	At5g44920	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	EBem05_SQ002_B05_at	EBem05_SQ002_B05	-	-	2e+0	At4g16447	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.24828.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Triticum aestivum	TaAffx.110292.1.S1_at	CA660775	-	-	1e-6	At1g68920	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.07	2e-1	34	Vitis vinifera	1621239_at	CF517123	-	-	2e+0	At4g13266	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.222.1.A1_at	AI670230	-	-	1e+1	At5g38650	proteasome maturation factor UMP1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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