Gene omics information

Query gene ID PtpAffx.225709.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.225709.1.S1_atpmrna45266--4e-1At3g19030unknown proteinS.X.H.G.
0.9699.8PtpAffx.220631.1.S1_atpmrna37041hypothetical protein-7e-1At3g46940deoxyuridine 5'-triphosphate nucleotidohydrolase familyS.X.H.G.
0.9399.5PtpAffx.140514.1.A1_atCV255394--2e-1At1g13080CYP71B2 (CYTOCHROME P450 71B2)S.X.H.G.
0.9299.3PtpAffx.224460.1.S1_x_atpmrna43015hypothetical protein-6e-1At2g38780unknown proteinS.X.H.G.
0.9299.3PtpAffx.225048.1.S1_atpmrna44125hypothetical protein-2e-1At1g48980oxidoreductaseS.X.H.G.
0.9097.9Ptp.7132.2.S1_atDN494473--4e-1At5g06710HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)S.X.H.G.
0.9097.9PtpAffx.7770.1.A1_atCA934754--4e+0At1g58460unknown proteinS.X.H.G.
0.8997.8PtpAffx.13927.1.S1_atCX660204hypothetical protein-2e-6At5g19300-S.X.H.G.
0.8597.2Ptp.7970.1.S1_atDN502791--4e+0At2g35070unknown proteinS.X.H.G.
0.7794.9PtpAffx.216920.1.S1_atpmrna31994--4e-11At5g15700DNA-directed RNA polymerase (RPOT2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.2100.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
15.399.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
8.198.5GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
1.279.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
0.974.2GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
0.872.0GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.769.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.563.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
0.459.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.121e-36155PtpAffx.224634.1.S1_s_atpmrna43363hypothetical protein-3e-2At1g24430transferase/ transferase, transferring acyl groups other than amino-acyl groupsC.G.S.X.
0.121e-36155PtpAffx.224634.1.S1_atpmrna43363hypothetical protein-3e-2At1g24430transferase/ transferase, transferring acyl groups other than amino-acyl groupsC.G.S.X.
0.022e-138Ptp.6950.1.S1_atCX659808hypothetical protein-8e-7At1g49850zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.016e-136PtpAffx.206036.1.S1_s_atpmrna11960global transcription factor group-2e-31At1g65440GTB1C.G.S.X.
0.026e-136PtpAffx.157582.1.S1_atCF236034--2e+0At5g41390-C.G.S.X.
0.023e+034PtpAffx.90500.1.S1_atDN486316hypothetical protein-6e-1At1g08370DCP1 (decapping 1)C.G.S.X.
0.023e+034PtpAffx.8841.2.A1_atCV233949hypothetical protein-8e-49At3g55140pectate lyase family proteinC.G.S.X.
0.023e+034PtpAffx.223409.1.S1_atpmrna41395hypothetical protein-2e-59At4g13730RabGAP/TBC domain-containing proteinC.G.S.X.
0.033e+034PtpAffx.219536.1.S1_s_atpmrna35482hypothetical protein-1e-11At3g51550FER (FERONIA)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-136Arabidopsis thalianaAt3g19030821436unknown proteinF:molecular_function unknown;P:pyridoxine biosynthetic process, homoserine biosynthetic process;C:endomembrane system;P---C.G.S.X.
0.026e-136Glycine maxGmaAffx.93286.1.S1_atCF807610--1e-6At3g16150L-asparaginase, putative / L-asparagine amidohydrolase, putativeC.G.S.X.
0.023e+032Hordeum vulgareContig14753_atContig14753--4e-7At5g38060unknown proteinC.G.S.X.
0.026e-240Oryza sativaOs01g0945100NM_189752.1-Amino acid/polyamine transporter I family protein5e-5At2g01170BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)C.G.S.X.
0.033e-240Triticum aestivumTaAffx.109322.1.S1_atCA677099--2e+1At5g4004060S acidic ribosomal protein P2 (RPP2E)C.G.S.X.
0.043e-238Vitis vinifera1610086_atCF606487--2e+0At2g44940AP2 domain-containing transcription factor TINY, putativeC.G.S.X.
0.028e-134Zea maysZm.17670.1.A1_atCF637959--6e+0At5g59080unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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