Gene omics information

Query gene ID	PtpAffx.225549.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.225549.1.S1_s_at	pmrna44977	hypothetical protein	-	0	Atcg00280	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.162388.1.S1_at	CX186725	-	-	2e-48	Atcg00300	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.216969.1.S1_s_at	pmrna32052	hypothetical protein	-	4e-39	Atcg00280	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.2954.1.S1_s_at	CK109808	hypothetical protein	-	3e-45	Atcg00070	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2646.1.S1_s_at	BU871549	hypothetical protein	-	3e-24	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.216449.1.S1_at	pmrna31228	hypothetical protein	-	6e-143	Atcg00440	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	833	PtpAffx.225378.1.S1_at	pmrna44690	hypothetical protein	-	3e-155	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.68	0	634	PtpAffx.224941.1.S1_at	pmrna43878	hypothetical protein	-	4e-143	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	1e-157	557	PtpAffx.205033.1.S1_at	pmrna9971	hypothetical protein	-	1e-104	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	8e-137	488	PtpAffx.218752.1.S1_s_at	pmrna34475	hypothetical protein	-	2e-124	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	1e-92	341	PtpAffx.224560.1.S1_at	pmrna43207	-	-	6e-67	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	7e-54	212	PtpAffx.212166.1.S1_at	pmrna23855	-	-	6e-44	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	7e-54	212	PtpAffx.212166.1.S1_x_at	pmrna23855	-	-	6e-44	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-52	208	PtpAffx.216969.1.S1_x_at	pmrna32052	hypothetical protein	-	4e-39	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-52	208	PtpAffx.216969.1.S1_s_at	pmrna32052	hypothetical protein	-	4e-39	Atcg00280	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1764	Arabidopsis thaliana	Atcg00280	-	-	chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	4e-114	412	Glycine max	GmaAffx.4691.1.A1_at	BG352909	-	-	4e-123	Atcg00280	-	C.G.	S.X.	Please select
0.45	1e-121	436	Hordeum vulgare	ChlorContig14_at	ChlorContig14	-	-	4e-157	Atcg00280	-	C.G.	S.X.	Please select
0.90	0	1392	Oryza sativa	OsAffx.32350.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.76	0	1316	Triticum aestivum	TaAffx.128712.2.S1_s_at	CA674993	Photosystem II CP43 chlorophyll apoprotein	-	0	Atcg00280	-	C.G.	S.X.	Please select
0.39	2e-69	262	Vitis vinifera	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	C.G.	S.X.	Please select
0.90	0	1408	Zea mays	ZmAffx.1443.1.S1_at	11990232-7	-	-	0	Atcg00280	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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