CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.225523.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.225523.1.S1_at pmrna44929 hypothetical protein - 2e+0 At4g28530 anac074 (Arabidopsis NAC domain containing protein 74) S.X. H.G.
0.60 86.0 PtpAffx.108465.1.A1_at CV239650 - - 1e-3 At3g16780 60S ribosomal protein L19 (RPL19B) S.X. H.G.
0.31 53.7 Ptp.2510.1.S1_at CF228021 fasciclin-like domain-containing protein /// fasciclin-like domain-containing protein - 9e-19 At2g35860 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) S.X. H.G.
0.27 47.1 PtpAffx.5944.1.A1_at CV228432 hypothetical protein - 3e-4 At5g19250 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.219555.1.S1_at pmrna35507 - - 2e+1 At2g30933 - S.X. H.G.
0.07 11.6 PtpAffx.220457.1.S1_at pmrna36850 hypothetical protein - 1e+0 At2g22470 AGP2 (ARABINOGALACTAN PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.1 100.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.2 97.6 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3 96.9 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 PtpAffx.225548.1.S1_at pmrna44976 hypothetical protein - 0 Atmg01360 - C.G. S.X.
0.03 3e-3 44 PtpAffx.225495.1.S1_s_at pmrna44880 hypothetical protein - 0 Atmg01360 - C.G. S.X.
0.02 2e-1 38 PtpAffx.104567.1.S1_at CV249582 - - 1e-11 At4g18890 brassinosteroid signalling positive regulator-related C.G. S.X.
0.01 6e-1 36 PtpAffx.223159.1.S1_at pmrna41022 hypothetical protein - 1e+1 At5g35230 unknown protein C.G. S.X.
0.01 6e-1 36 PtpAffx.219256.1.S1_at pmrna35121 hypothetical protein - 3e+0 At1g53400 unknown protein C.G. S.X.
0.03 3e+0 34 PtpAffx.223253.1.S1_at pmrna41156 hypothetical protein - 6e-2 At3g13780 - C.G. S.X.
0.02 3e+0 34 PtpAffx.219884.1.S1_at pmrna36040 hypothetical protein - 7e+0 At5g13450 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.215278.1.S1_at pmrna29371 hypothetical protein - 1e+1 At5g44610 MAP18 (Microtubule-associated Protein 18) C.G. S.X.
0.02 3e+0 34 PtpAffx.211633.1.S1_at pmrna22798 hypothetical protein - 4e-1 At3g13500 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At4g28530 828971 anac074 (Arabidopsis NAC domain containing protein 74) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P - - - C.G. S.X.
0.03 3e+0 34 Glycine max PsAffx.psMA012xJ18f_at PsAffx.psMA012xJ18f - - 5e-1 At4g39070 zinc finger (B-box type) family protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HB32E08r_at HB32E08r - - 7e-1 At3g15370 ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12) C.G. S.X.
0.03 4e-3 44 Oryza sativa OsAffx.32304.1.A1_at - - - 0 C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.77820.1.S1_at CA743172 - - 4e+0 At4g21720 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1614246_at CF202512.1 - - 3e-4 At1g23480 ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) C.G. S.X.
0.03 5e-2 38 Zea mays Zm.15223.1.A1_at BM335001 - - 1e+1 At3g27940 LBD26 (LOB DOMAIN-CONTAINING PROTEIN 26) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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