CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.225506.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.225506.1.S1_at pmrna44897 hypothetical protein - 1e-6 At5g03620 subtilase family protein S.X. H.G.
0.55 82.2 PtpAffx.207395.1.S1_at pmrna14671 hypothetical protein - 3e-63 At3g51070 dehydration-responsive protein-related S.X. H.G.
0.50 78.6 PtpAffx.205555.1.S1_s_at pmrna10986 MIKC mads-box transcription factor /// hypothetical protein - 2e-11 At5g20240 PI (PISTILLATA) S.X. H.G.
0.46 73.7 PtpAffx.217355.1.S1_at pmrna32577 hypothetical protein - 9e-1 At3g25573 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.50213.1.S1_at AY235222.1 hypothetical protein - 2e-75 At1g24260 SEP3 (SEPALLATA3) S.X. H.G.
0.40 67.0 PtpAffx.213564.1.S1_at pmrna26499 aldose reductase with ABC domain - 5e-1 At2g37760 aldo/keto reductase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.5 99.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
30.2 99.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
25.5 99.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.7 69.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.1 42.9 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.1 42.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.1 42.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-8 61 PtpAffx.216346.1.S1_at pmrna31062 - - 2e-1 At4g11630 ribosomal protein L19 family protein C.G. S.X.
0.04 3e-5 52 PtpAffx.212084.1.S1_at pmrna23709 hypothetical protein - 7e-8 At4g21326 ATSBT3.12 (SUBTILASE 3.12) C.G. S.X.
0.06 1e-4 50 PtpAffx.210773.1.S1_at pmrna21136 hypothetical protein - 1e-3 At4g15040 identical protein binding / serine-type endopeptidase C.G. S.X.
0.02 1e-4 50 PtpAffx.203202.1.S1_at pmrna6346 hypothetical protein - 2e-8 At4g21326 ATSBT3.12 (SUBTILASE 3.12) C.G. S.X.
0.04 4e-4 48 PtpAffx.224309.1.S1_at pmrna42737 hypothetical protein - 2e-2 At5g59810 SBT5.4 C.G. S.X.
0.04 4e-4 48 PtpAffx.209313.1.S1_at pmrna18406 hypothetical protein - 3e-1 At5g59130 subtilase family protein C.G. S.X.
0.02 4e-4 48 PtpAffx.203201.1.S1_at pmrna6344 hypothetical protein - 3e-4 At4g21326 ATSBT3.12 (SUBTILASE 3.12) C.G. S.X.
0.04 2e-3 46 PtpAffx.204478.1.S1_at pmrna8790 - - 7e-2 At4g21650 subtilase family protein C.G. S.X.
0.04 2e-3 46 PtpAffx.200469.1.S1_s_at pmrna947 hypothetical protein - 4e-6 At4g21326 ATSBT3.12 (SUBTILASE 3.12) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-6 56 Arabidopsis thaliana At5g03620 831777 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM - - - C.G. S.X.
0.03 3e-5 52 Glycine max Gma.3460.1.S1_at BQ629044 subtilisin-like protease C1 - 7e-5 At5g59190 subtilase family protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig22733_at Contig22733 - - 2e+0 At2g17800 ARAC1 C.G. S.X.
0.03 2e-4 50 Oryza sativa Os04g0120200 9632.m00205 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e+0 At4g15040 identical protein binding / serine-type endopeptidase C.G. S.X.
0.02 7e-2 40 Triticum aestivum Ta.26151.1.A1_at CA604082 - - 5e-1 At1g73470 unknown protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1613980_at CB968799 hypothetical protein LOC100264662 - 2e-6 At2g05920 subtilase family protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.3613.1.A1_at BG841007 hypothetical protein LOC100273532 - 4e-24 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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