Gene omics information

Query gene ID	PtpAffx.225478.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.225478.1.S1_at	pmrna44846	hypothetical protein	-	8e-10	At1g29720	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.219046.1.S1_s_at	pmrna34844	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	9e-2	At5g60530	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.208409.1.S1_s_at	pmrna16713	hypothetical protein	-	9e-4	At1g69870	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.7372.2.S1_a_at	CV269484	hypothetical protein	-	6e+0	At5g53420	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.22209.1.S1_at	CK094003	-	-	8e+0	At5g20165	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.101934.1.A1_at	CV244591	thioredoxin f	-	5e-13	At5g16400	ATF2	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	99.1	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.3	99.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.3	99.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.3	98.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.2	98.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.5	97.1	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.5	97.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2930	PtpAffx.225478.1.S1_x_at	pmrna44846	hypothetical protein	-	8e-10	At1g29720	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.75	0	2284	PtpAffx.219332.1.S1_x_at	pmrna35221	hypothetical protein	-	2e-14	At1g29720	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.63	0	1057	PtpAffx.225420.1.S1_x_at	pmrna44760	hypothetical protein	-	2e-16	At1g29720	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.52	0	722	PtpAffx.209803.1.S1_x_at	pmrna19339	hypothetical protein	-	2e-10	At1g29720	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	6e-141	502	PtpAffx.225270.1.S1_at	pmrna44499	hypothetical protein	-	8e-17	At1g29720	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	9e-103	375	PtpAffx.217718.1.S1_x_at	pmrna33084	hypothetical protein	-	2e+0	At5g01750	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	1e-98	361	PtpAffx.220931.1.S1_x_at	pmrna37424	hypothetical protein	-	3e-11	At1g07650	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	3e-90	333	PtpAffx.221390.1.S1_x_at	pmrna38261	hypothetical protein	-	2e+0	At5g01750	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	2e-76	287	PtpAffx.217752.1.S1_at	pmrna33140	hypothetical protein	-	1e-10	At1g29720	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	8e-10	65	Arabidopsis thaliana	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	9e-23	109	Glycine max	Gma.17602.1.S1_at	BM271089	-	-	4e-42	At1g53430	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.13	3e-14	79	Hordeum vulgare	Contig10292_at	Contig10292	-	-	9e-23	At1g07650	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.11	1e-13	79	Oryza sativa	Os09g0345300	AK066121.1	-	Receptor protein kinase	2e-21	At1g07650	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-8	61	Triticum aestivum	TaAffx.104738.1.S1_at	CA745497	-	-	1e-15	At1g53430	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.08	1e-9	63	Vitis vinifera	1613675_at	CF519011	hypothetical protein LOC100249786	-	3e-1	At1g79760	DTA4 (DOWNSTREAM TARGET OF AGL15-4)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	ZmAffx.415.1.A1_at	AI670503	-	-	1e+1	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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