Gene omics information

Query gene ID	PtpAffx.225371.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.225371.1.S1_at	pmrna44680	hypothetical protein	-	2e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.209713.1.S1_at	pmrna19174	hypothetical protein	-	7e-31	At1g11190	BFN1 (BIFUNCTIONAL NUCLEASE I)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.205555.1.S1_s_at	pmrna10986	MIKC mads-box transcription factor /// hypothetical protein	-	2e-11	At5g20240	PI (PISTILLATA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.200964.1.S1_at	pmrna1885	hypothetical protein	-	2e-39	At5g40350	MYB24 (myb domain protein 24)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.225506.1.S1_at	pmrna44897	hypothetical protein	-	1e-6	At5g03620	subtilase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.207395.1.S1_at	pmrna14671	hypothetical protein	-	3e-63	At3g51070	dehydration-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
29.0	99.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
27.9	99.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.8	72.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.8	72.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.4	59.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.3	55.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.2	49.7	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.2	49.7	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
0.2	49.7	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2284	PtpAffx.225371.1.S1_s_at	pmrna44680	hypothetical protein	-	2e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.96	0	1935	PtpAffx.225372.1.S1_at	pmrna44681	hypothetical protein	-	2e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.80	0	743	PtpAffx.225278.1.S1_at	pmrna44508	hypothetical protein	-	9e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	1e-11	71	PtpAffx.224660.1.S1_at	pmrna43417	hypothetical protein	-	2e-6	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-4	48	PtpAffx.219978.1.S1_at	pmrna36182	hypothetical protein	-	6e-7	At4g31810	enoyl-CoA hydratase/isomerase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.213249.1.S1_at	pmrna25911	hypothetical protein	-	4e-2	At3g56720	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	Ptp.5427.1.A1_s_at	CV227057	hypothetical protein	-	1e-13	At4g12440	adenine phosphoribosyltransferase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.7936.1.A1_at	CV256368	dehydroquinate dehydratase/ shikimate dehydrogenase	-	7e-1	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.6778.2.S1_a_at	CV276301	hypothetical protein	-	3e-39	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-3	44	Arabidopsis thaliana	At5g65940	836724	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	hydrolyzes beta-hydroxyisobutyryl-CoA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-3	44	Glycine max	Gma.7192.1.S1_at	BU765896	Peroxisomal 3-hydroxyisobutyryl-coenzyme A hydrolase	-	7e-26	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	rbaal1e15_at	rbaal1e15	-	-	9e-1	At4g20470	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	40	Oryza sativa	Os12g0264500	CB630638	-	CoA-thioester hydrolase CHY1(3-hydroxyisobutyryl-coenzyme A hydrolase)	3e-13	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-5	52	Triticum aestivum	Ta.6750.3.S1_at	CA649267	-	-	1e-23	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1619015_at	CD715247	-	-	2e-8	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.03	6e-2	38	Zea mays	Zm.9486.1.A1_at	CK347877	CHY1	-	1e-18	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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