Gene omics information

Query gene ID	PtpAffx.225155.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.225155.1.S1_x_at	pmrna44292	hypothetical protein	-	6e-1	At2g01175	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.93051.1.S1_at	DN500871	hypothetical protein	-	2e+0	At4g25210	transcription regulator	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.121936.1.S1_at	AJ779024	-	-	1e-3	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.221670.1.S1_at	pmrna38671	hypothetical protein	-	2e+0	At1g70400	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.223499.1.S1_at	pmrna41538	hypothetical protein	-	5e-1	At3g53560	chloroplast lumen common family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.7780.1.S1_at	DN499145	precursor of transferase serine hydroxymethyltransferase 7	-	7e-11	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.3518.1.A1_at	DN492409	-	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.221677.1.S1_x_at	pmrna38681	hypothetical protein	-	7e-1	At1g51330	serpin-related / serine protease inhibitor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.2988.1.A1_at	DN487753	-	-	4e+0	At5g16510	reversibly glycosylated polypeptide, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.8131.6.A1_a_at	DN486718	hypothetical protein	-	1e+0	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.2	99.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
20.3	99.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.1	98.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.9	98.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.3	81.0	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	2e-140	498	PtpAffx.225048.1.S1_at	pmrna44125	hypothetical protein	-	2e-1	At1g48980	oxidoreductase	C.G.	S.X.	Please selecteFP Browser (expression)
0.94	2e-128	458	PtpAffx.224460.1.S1_x_at	pmrna43015	hypothetical protein	-	6e-1	At2g38780	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	9e-84	309	PtpAffx.225435.1.S1_x_at	pmrna44784	hypothetical protein	-	4e+0	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	1e-14	79	PtpAffx.37937.1.A1_at	CV232965	-	-	3e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-3	42	PtpAffx.206634.1.S1_at	pmrna13171	hypothetical protein	-	1e-30	At4g33200	XI-I	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.766.1.S1_s_at	CV260933	hypothetical protein	-	2e-135	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.766.1.S1_at	CV260933	hypothetical protein	-	2e-135	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	32	PtpAffx.35239.1.S1_at	DN489261	hypothetical protein	-	8e-13	At3g04300	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.219690.1.S1_at	pmrna35670	hypothetical protein	-	4e-6	At2g06040	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-1	34	Arabidopsis thaliana	At2g01175	2745418	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	Gma.4283.1.S1_at	BI971866	-	-	2e+0	At3g25650	ASK15 (ARABIDOPSIS SKP1-LIKE 15)	C.G.	S.X.	Please select
0.04	4e+0	30	Hordeum vulgare	Contig15335_s_at	Contig15335	-	-	1e-3	At3g56850	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.04	5e+0	32	Oryza sativa	OsAffx.11298.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e+0	32	Triticum aestivum	TaAffx.4553.3.S1_at	CA685451	-	-	1e+1	At3g06470	GNS1/SUR4 membrane family protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1610474_at	CF211354	similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter	-	1e+0	At1g29950	transcription factor/ transcription regulator	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.1380.1.A1_at	BF733107	-	-	2e+1	At5g28463	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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