Gene omics information

Query gene ID	PtpAffx.225107.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	92.7	PtpAffx.225107.1.S1_at	pmrna44210	hypothetical protein	-	3e-4	At1g28170	sulfotransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.217950.1.S1_s_at	pmrna33421	hypothetical protein	-	2e+0	At3g45870	integral membrane family protein / nodulin MtN21-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.62	87.2	PtpAffx.219306.1.S1_s_at	pmrna35187	hypothetical protein	-	2e-1	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	S.X.	H.G.	Please selecteFP Browser (expression)
0.62	87.2	PtpAffx.200015.1.S1_at	pmrna24	cytochrome P450	-	8e-1	At5g36130	cytochrome P450 family	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.219304.1.S1_s_at	pmrna35185	hypothetical protein	-	2e-1	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.249.67.A1_at	CV240981	-	-	4e-12	At1g47710	serpin, putative / serine protease inhibitor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.206099.1.S1_at	pmrna12085	hypothetical protein	-	8e-3	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.6057.1.S1_s_at	CK090638	anthocyanidin synthase	-	5e-2	At4g22880	LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.145936.1.S1_at	CX181983	-	-	5e+0	At5g48190	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.203765.1.S1_at	pmrna7437	hypothetical protein	-	8e-1	At4g28680	tyrosine decarboxylase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
9.8	98.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.5	98.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.7	98.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.6	98.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8	96.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7	96.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1225	PtpAffx.225107.1.S1_x_at	pmrna44210	hypothetical protein	-	3e-4	At1g28170	sulfotransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	674	PtpAffx.225342.1.S1_x_at	pmrna44626	hypothetical protein	-	1e-4	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	674	PtpAffx.225342.1.S1_s_at	pmrna44626	hypothetical protein	-	1e-4	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.58	6e-179	626	PtpAffx.224334.1.S1_at	pmrna42788	-	-	1e-4	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.68	4e-152	537	PtpAffx.224130.1.S1_s_at	pmrna42377	hypothetical protein	-	1e-1	At1g28170	sulfotransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.68	4e-152	537	PtpAffx.224130.1.S1_at	pmrna42377	hypothetical protein	-	1e-1	At1g28170	sulfotransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	5e-19	95	PtpAffx.225117.1.S1_x_at	pmrna44226	hypothetical protein	-	1e-1	At5g07000	ST2B (SULFOTRANSFERASE 2B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	5e-19	95	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	5e-19	95	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-4	46	Arabidopsis thaliana	At1g28170	839711	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	32	Glycine max	PsAffx.C5000199_at	PsAffx.C5000199	-	-	1e+0	At3g02420	unknown protein	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	HVSMEi0001B07r2_at	HVSMEi0001B07r2	-	-	6e-1	At5g34828	-	C.G.	S.X.	Please select
0.03	9e+0	32	Oryza sativa	OsAffx.31154.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Triticum aestivum	TaAffx.4661.1.S1_at	CA735340	-	-	7e-1	At2g45403	unknown protein	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1611953_at	CB968896	-	-	1e+0	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.90.1.A1_at	AI665360	-	-	3e+0	At2g01755	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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