CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.225099.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.225099.1.S1_at pmrna44197 hypothetical protein - 3e-109 At4g30020 subtilase family protein S.X. H.G.
0.67 91.1 PtpAffx.205154.1.S1_at pmrna10202 hypothetical protein - 2e-1 At2g01870 unknown protein S.X. H.G.
0.60 86.0 PtpAffx.203765.1.S1_at pmrna7437 hypothetical protein - 8e-1 At4g28680 tyrosine decarboxylase, putative S.X. H.G.
0.57 84.2 PtpAffx.204886.1.S1_at pmrna9652 white-brown-complex ABC transporter family - 5e-46 At1g51500 CER5 (ECERIFERUM 5) S.X. H.G.
0.50 78.6 PtpAffx.249.169.A1_a_at CV260069 hypothetical protein - 1e+0 At5g42030 ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) S.X. H.G.
0.40 67.0 PtpAffx.134527.1.A1_at CV232655 hypothetical protein - 1e-6 At1g28110 SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 99.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
11.8 99.2 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.4 99.0 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.6 98.6 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.4 97.7 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 0 1297 Ptp.2440.2.A1_s_at CK091021 hypothetical protein - 2e-15 At4g30020 subtilase family protein C.G. S.X.
0.41 0 886 PtpAffx.65047.1.S1_at CF232766 hypothetical protein - 3e-14 At2g19170 SLP3 C.G. S.X.
0.28 4e-177 623 PtpAffx.60298.1.S1_s_at CK106266 hypothetical protein - 2e-54 At2g19170 SLP3 C.G. S.X.
0.03 3e-5 52 PtpAffx.210145.1.S1_at pmrna19989 hypothetical protein - 2e-51 At4g20430 subtilase family protein C.G. S.X.
0.01 8e-3 44 PtpAffx.224309.1.S1_at pmrna42737 hypothetical protein - 2e-2 At5g59810 SBT5.4 C.G. S.X.
0.02 3e-2 42 PtpAffx.225375.1.S1_at pmrna44687 hypothetical protein - 6e-6 At5g59810 SBT5.4 C.G. S.X.
0.01 3e-2 42 PtpAffx.220000.1.S1_at pmrna36232 hypothetical protein - 5e-6 At4g30020 subtilase family protein C.G. S.X.
0.01 3e-2 42 PtpAffx.209628.1.S1_at pmrna19023 hypothetical protein - 1e-9 At1g62340 ALE1 (ABNORMAL LEAF-SHAPE 1) C.G. S.X.
0.01 1e-1 40 PtpAffx.224437.1.S1_at pmrna42960 hypothetical protein - 1e-3 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 3e-109 397 Arabidopsis thaliana At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM - - - C.G. S.X.
0.39 5e-121 436 Glycine max Gma.7222.2.S1_at AW759469 - - 8e-18 At4g30020 subtilase family protein C.G. S.X.
0.14 6e-23 109 Hordeum vulgare Contig12129_at Contig12129 - - 2e-14 At4g30020 subtilase family protein C.G. S.X.
0.23 5e-51 204 Oryza sativa Os06g0700000 AK102835.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e-53 At2g19170 SLP3 C.G. S.X.
0.18 8e-30 133 Triticum aestivum Ta.29457.1.S1_at CK205969 - - 1e-18 At4g30020 subtilase family protein C.G. S.X.
0.15 1e-38 161 Vitis vinifera 1608213_at CF209965 hypothetical protein LOC100245233 - 9e-2 At2g26290 ARSK1 (root-specific kinase 1) C.G. S.X.
0.10 3e-27 123 Zea mays Zm.10200.1.A1_at BM379455 hypothetical protein LOC100274487 - 4e-6 At4g30020 subtilase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage