CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.225048.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase S.X. H.G.
0.91 99.2 PtpAffx.224460.1.S1_x_at pmrna43015 hypothetical protein - 6e-1 At2g38780 unknown protein S.X. H.G.
0.91 99.2 PtpAffx.220631.1.S1_at pmrna37041 hypothetical protein - 7e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.91 99.2 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
0.83 97.0 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - S.X. H.G.
0.77 94.9 PtpAffx.140514.1.A1_at CV255394 - - 2e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.5 100.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.5 98.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.8 72.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.3 55.0 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.2 49.7 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 3e-140 498 PtpAffx.225155.1.S1_x_at pmrna44292 hypothetical protein - 6e-1 At2g01175 unknown protein C.G. S.X.
0.72 1e-130 466 PtpAffx.224460.1.S1_x_at pmrna43015 hypothetical protein - 6e-1 At2g38780 unknown protein C.G. S.X.
0.22 1e-124 446 PtpAffx.225435.1.S1_x_at pmrna44784 hypothetical protein - 4e+0 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.25 7e-24 111 PtpAffx.37937.1.A1_at CV232965 - - 3e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.05 2e-12 73 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - C.G. S.X.
0.11 6e-12 71 PtpAffx.224805.1.S1_at pmrna43665 hypothetical protein - 7e+0 At5g57181 unknown protein C.G. S.X.
0.12 2e-11 69 PtpAffx.225332.1.S1_x_at pmrna44598 hypothetical protein - 1e-1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) C.G. S.X.
0.11 2e-11 69 PtpAffx.225422.1.S1_at pmrna44762 hypothetical protein - 1e-1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) C.G. S.X.
0.24 1e-10 67 PtpAffx.225588.1.S1_x_at pmrna45040 hypothetical protein - 3e+0 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 36 Arabidopsis thaliana At1g48980 841320 oxidoreductase F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOB - - - C.G. S.X.
0.04 1e+0 34 Glycine max Gma.12825.1.A1_at CD391595 - - 1e+1 At3g18715 IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEl0012K16r2_at HVSMEl0012K16r2 - - 3e+0 At5g47050 protein binding / zinc ion binding C.G. S.X.
0.04 8e+0 32 Oryza sativa OsAffx.11298.1.S1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.12517.1.S1_at BJ257824 - - 1e+0 At5g34581 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1616724_at CF513188 - - 1e+0 At5g47060 senescence-associated protein-related C.G. S.X.
0.04 2e+0 32 Zea mays Zm.17766.1.S1_at CK371550 - - 3e+0 At5g14730 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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