CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.224890.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.224890.1.S1_at pmrna43799 - - 1e-1 At4g18180 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.73 93.6 PtpAffx.206303.1.S1_at pmrna12504 hypothetical protein - 9e-14 At3g45810 ferric reductase-like transmembrane component family protein S.X. H.G.
0.60 86.0 PtpAffx.207343.1.S1_at pmrna14568 hypothetical protein - 1e-1 At5g05840 unknown protein S.X. H.G.
0.46 73.7 PtpAffx.2601.1.S1_at DN491679 hypothetical protein - 4e-1 At4g27750 ISI1 (IMPAIRED SUCROSE INDUCTION 1) S.X. H.G.
0.43 69.7 PtpAffx.213252.1.S1_at pmrna25920 hypothetical protein - 8e-45 At2g41210 PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5) S.X. H.G.
0.36 61.6 PtpAffx.207908.1.S1_at pmrna15697 hypothetical protein - 9e-36 At2g03710 SEP4 (SEPALLATA 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.7 99.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
19.5 99.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
17.2 99.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
16.0 99.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
13.4 99.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.2 49.7 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.2 49.7 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.2 49.7 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-4 48 PtpAffx.218374.1.S1_at pmrna33961 hypothetical protein - 6e-4 At4g32380 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 3e-3 44 PtpAffx.27440.1.S1_at DN486268 hypothetical protein - 5e-7 At2g41850 PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA) C.G. S.X.
0.03 3e-3 44 PtpAffx.214194.1.S1_at pmrna27616 hypothetical protein - 9e-3 At5g14650 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 1e-2 42 PtpAffx.206788.1.S1_at pmrna13473 hypothetical protein - 3e-2 At3g15720 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 5e-2 40 PtpAffx.225621.1.S1_s_at pmrna45084 hypothetical protein - 8e-6 At2g40310 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 5e-2 40 PtpAffx.225189.1.S1_s_at pmrna44343 hypothetical protein - 1e-2 At5g48140 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 5e-2 40 PtpAffx.224538.1.S1_at pmrna43159 hypothetical protein - 2e-7 At2g43870 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 5e-2 40 PtpAffx.204844.1.S1_at pmrna9562 hypothetical protein - 6e-10 At3g07970 QRT2 (QUARTET 2) C.G. S.X.
0.02 2e-1 38 PtpAffx.95107.1.A1_s_at CV274898 hypothetical protein - 1e+0 At5g67490 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At4g18180 827543 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA - - - C.G. S.X.
0.03 7e-1 36 Glycine max GmaAffx.86168.1.S1_at BQ273613 - - 9e-1 At1g51670 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare rbaal9k07_at rbaal9k07 - - 1e+0 At5g06380 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.28114.2.A1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.38100.1.A1_at BJ250181 - - 4e+0 At3g01185 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1620298_at CF513792 hypothetical protein LOC100253937 - 1e-18 At1g47270 AtTLP6 (TUBBY LIKE PROTEIN 6) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.1086.1.A1_at AW018229 - - 3e+0 At2g01755 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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