Gene omics information

Query gene ID	PtpAffx.224879.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.41	67.7	PtpAffx.224879.1.S1_x_at	pmrna43783	hypothetical protein	-	5e-65	At4g01810	protein transport protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.17925.1.S1_at	AJ767519	methionine sulfoxide reductase type	-	8e-15	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.146713.1.A1_at	CV238136	-	-	4e-1	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.2609.2.S1_x_at	CV283556	hypothetical protein	-	4e-91	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.133834.1.A1_at	CV243421	hypothetical protein	-	2e-8	At5g67320	HOS15 (high expression of osmotically responsive genes 15)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.5471.1.A1_s_at	CV252337	hypothetical protein	-	3e-15	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.2609.2.S1_at	CV283556	hypothetical protein	-	4e-91	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.8027.2.A1_a_at	CV250178	hypothetical protein	-	1e-4	At5g42520	ATBPC6	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.4580.1.S1_at	CV247339	hypothetical protein	-	1e-1	At4g17060	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	5188	PtpAffx.224879.1.S1_at	pmrna43783	hypothetical protein	-	5e-65	At4g01810	protein transport protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.85	0	3422	PtpAffx.224256.1.S1_s_at	pmrna42648	hypothetical protein	-	4e-53	At4g01810	protein transport protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	0	856	PtpAffx.29077.1.A1_s_at	BP932827	hypothetical protein	-	1e-28	At4g01810	protein transport protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	1e-63	246	PtpAffx.7536.3.A1_at	CV227608	-	-	5e+0	At5g35526	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	1e-63	246	PtpAffx.7536.3.A1_a_at	CV227608	hypothetical protein	-	5e+0	At5g35526	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-28	129	PtpAffx.221016.1.S1_at	pmrna37549	hypothetical protein	-	2e-5	At4g01810	protein transport protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-28	129	PtpAffx.221016.1.S1_x_at	pmrna37549	hypothetical protein	-	2e-5	At4g01810	protein transport protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	4e-26	121	PtpAffx.219920.1.S1_at	pmrna36085	hypothetical protein	-	5e-2	At4g01810	protein transport protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-3	44	Ptp.7897.1.S1_at	DN500802	multidrug resistance protein ABC transporter family	-	8e-11	At3g62700	ATMRP10	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	5e-65	250	Arabidopsis thaliana	At4g01810	828105	protein transport protein-related	F:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;PMOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	6e-93	343	Glycine max	GmaAffx.65948.1.S1_at	BE023123	-	-	3e-22	At4g01810	protein transport protein-related	C.G.	S.X.	Please select
0.16	3e-18	93	Hordeum vulgare	Contig16659_at	Contig16659	-	-	1e-6	At4g01810	protein transport protein-related	C.G.	S.X.	Please select
0.24	1e-27	127	Oryza sativa	Os01g0321700	AK070488.1	-	Sec23/Sec24 zinc finger domain containing protein	2e-3	At4g01810	protein transport protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-18	95	Triticum aestivum	Ta.9562.1.S1_a_at	AJ613140	-	-	1e-2	At4g01810	protein transport protein-related	C.G.	S.X.	Please select
0.57	0	793	Vitis vinifera	1621533_at	CF514195	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	C.G.	S.X.	Please select
0.16	3e-21	103	Zea mays	Zm.13665.1.S1_at	AY107083.1	-	-	8e-4	At4g01810	protein transport protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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