Gene omics information

Query gene ID	PtpAffx.224796.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	91.5	PtpAffx.224796.1.S1_s_at	pmrna43650	hypothetical protein	-	5e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.134772.1.S1_s_at	DN483641	ABC transporter family, retinal flippase subfamily	-	1e-3	At5g61690	ATATH15	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.145511.1.S1_at	BP927294	hypothetical protein	-	1e+0	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.204500.1.S1_s_at	pmrna8828	lysine/histidine transporter /// lysine/histidine transporter	-	2e-7	At1g47670	amino acid transporter family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.202418.1.S1_at	pmrna4854	multidrug/pheromone exporter, MDR family, ABC transporter family	-	3e-24	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.200436.1.S1_at	pmrna877	hypothetical protein	-	3e-2	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
16.7	99.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	892	PtpAffx.224218.1.S1_at	pmrna42563	hypothetical protein	-	3e-6	At5g44400	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	7e-76	286	PtpAffx.1501.1.A1_at	CV265283	-	-	7e-1	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	7e-73	276	Ptp.732.2.S1_at	CA934320	hypothetical protein	-	1e-7	At5g44390	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	6e-67	256	PtpAffx.54313.1.S1_at	AI166744	hypothetical protein	-	2e-9	At5g44390	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	2e-61	238	PtpAffx.225253.1.S1_at	pmrna44474	hypothetical protein	-	1e-2	At5g44410	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	2e-54	214	PtpAffx.54313.2.S1_at	BU895504	hypothetical protein	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	2e-54	214	PtpAffx.54313.2.S1_a_at	BU895504	-	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	1e-49	198	PtpAffx.64568.2.S1_a_at	DN490916	hypothetical protein	-	2e-2	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.58	8e-48	192	PtpAffx.225252.1.S1_at	pmrna44468	hypothetical protein	-	1e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-5	50	Arabidopsis thaliana	At2g34790	818044	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-12	75	Glycine max	GmaAffx.93045.1.S1_at	CF808770	-	-	6e-18	At5g44390	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.02	4e-1	36	Hordeum vulgare	Contig13053_at	Contig13053	-	-	5e-1	At5g28610	-	C.G.	S.X.	Please select
0.01	3e-2	42	Oryza sativa	Os05g0455700	AK070824.1	-	Uracil phosphoribosyl transferase family protein	3e-9	At3g53900	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Triticum aestivum	TaAffx.15699.1.A1_at	CD492063	-	-	2e+0	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.03	4e-9	61	Vitis vinifera	1622331_at	CD802025	hypothetical protein LOC100264985	-	6e-7	At1g11770	FAD binding / catalytic/ electron carrier/ oxidoreductase	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	ZmAffx.1281.1.S1_s_at	11990232-69	-	-	1e-55	Atcg01280	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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