CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.224789.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.224789.1.S1_s_at pmrna43638 hypothetical protein - 2e-19 At1g64710 alcohol dehydrogenase, putative S.X. H.G.
0.83 97.0 PtpAffx.208446.1.S1_at pmrna16778 cation proton exchanger - 2e+0 At5g39870 unknown protein S.X. H.G.
0.80 96.0 PtpAffx.206905.1.S1_at pmrna13708 hypothetical protein - 1e-2 At5g44265 lipid binding S.X. H.G.
0.60 86.0 PtpAffx.223899.1.S1_at pmrna42121 hypothetical protein - 3e+0 At4g13520 SMAP1 (SMALL ACIDIC PROTEIN 1) S.X. H.G.
0.50 78.6 PtpAffx.223899.1.S1_x_at pmrna42121 hypothetical protein - 3e+0 At4g13520 SMAP1 (SMALL ACIDIC PROTEIN 1) S.X. H.G.
0.26 45.2 PtpAffx.213608.1.S1_at pmrna26574 hypothetical protein - 2e-21 At5g60010 FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.6 100.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
30.3 99.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
17.6 99.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.9 74.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.0 33.6 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0 33.6 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0 33.6 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.87 0 971 PtpAffx.224208.1.S1_at pmrna42537 hypothetical protein - 6e-7 At1g32780 alcohol dehydrogenase, putative C.G. S.X.
0.02 2e-1 38 PtpAffx.208223.1.S1_at pmrna16367 hypothetical protein - 8e-3 Atmg00740 - C.G. S.X.
0.02 2e-1 38 PtpAffx.122583.1.S1_at CA927365 hypothetical protein - 4e-60 At4g27720 - C.G. S.X.
0.02 8e-1 36 PtpAffx.216290.1.S1_at pmrna30965 hypothetical protein - 5e-1 At1g22470 unknown protein C.G. S.X.
0.02 8e-1 36 PtpAffx.210619.1.S1_at pmrna20830 hypothetical protein - 5e-1 At1g73190 TIP3 C.G. S.X.
0.01 8e-1 36 PtpAffx.209881.1.S1_at pmrna19467 hypothetical protein - 7e-11 At1g29340 PUB17 (PLANT U-BOX 17) C.G. S.X.
0.02 8e-1 36 PtpAffx.144004.1.S1_at CF231087 hypothetical protein - 7e-6 At1g76600 unknown protein C.G. S.X.
0.05 3e+0 34 PtpAffx.71061.1.S1_at BU892027 hypothetical protein - 2e-38 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.01 3e+0 34 PtpAffx.225329.1.S1_at pmrna44595 hypothetical protein - 3e-1 At4g05440 EDA35 (embryo sac development arrest 35) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-19 97 Arabidopsis thaliana At1g64710 842779 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV - - - C.G. S.X.
0.10 6e-11 69 Glycine max GmaAffx.23670.1.S1_at BM309584 - - 2e-10 At1g64710 alcohol dehydrogenase, putative C.G. S.X.
0.06 7e-2 38 Hordeum vulgare Contig393_at Contig393 - - 3e-12 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.07 3e-1 38 Oryza sativa Os10g0159800 AK060781.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 8e-7 At1g64710 alcohol dehydrogenase, putative C.G. S.X.
0.05 2e+0 34 Triticum aestivum Ta.10015.2.S1_at CD872946 - - 8e-1 At1g64710 alcohol dehydrogenase, putative C.G. S.X.
0.04 7e-1 34 Vitis vinifera 1614086_at AF194173.1 alcohol dehydrogenase 1 - 3e-34 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.03 1e+0 34 Zea mays Zm.13921.1.S1_x_at Z35300.1 - - 4e+0 At2g07340 prefoldin-related KE2 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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