Gene omics information

Query gene ID	PtpAffx.224567.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.224567.1.S1_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.207395.1.S1_at	pmrna14671	hypothetical protein	-	3e-63	At3g51070	dehydration-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.205555.1.S1_s_at	pmrna10986	MIKC mads-box transcription factor /// hypothetical protein	-	2e-11	At5g20240	PI (PISTILLATA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.225506.1.S1_at	pmrna44897	hypothetical protein	-	1e-6	At5g03620	subtilase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.50213.1.S1_at	AY235222.1	hypothetical protein	-	2e-75	At1g24260	SEP3 (SEPALLATA3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.215800.1.S1_at	pmrna30196	hypothetical protein	-	2e-12	At3g19090	RNA-binding protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.3	100.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
30.9	99.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
17.9	99.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.1	42.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.0	33.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.0	33.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	3063	PtpAffx.224567.1.S1_s_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	1e-145	517	PtpAffx.75454.1.A1_at	CV269454	-	-	6e-27	At3g19930	STP4 (SUGAR TRANSPORTER 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	9e-63	242	PtpAffx.224569.1.S1_at	pmrna43220	hypothetical protein	-	6e-20	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	8e-11	69	PtpAffx.204076.1.S1_at	pmrna8050	hypothetical protein	-	5e-5	At3g19940	sugar transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	2e-8	61	Ptp.5719.1.S1_at	CV230467	hypothetical protein	-	5e-24	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	7e-8	59	Ptp.5715.1.S1_at	DN491817	hypothetical protein	-	1e-6	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-6	56	PtpAffx.64132.1.S1_at	BP930135	-	-	4e-10	At5g61520	hexose transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	7e-5	50	PtpAffx.213643.1.S1_at	pmrna26649	hypothetical protein	-	1e-8	At5g61520	hexose transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-4	48	PtpAffx.201922.1.S1_at	pmrna3830	hypothetical protein	-	1e-5	At3g19940	sugar transporter, putative	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	5e-42	173	Arabidopsis thaliana	At1g50310	841453	STP9 (SUGAR TRANSPORTER 9)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-31	137	Glycine max	GmaAffx.78316.1.S1_at	AW395888	-	-	3e-4	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.10	1e-7	57	Hordeum vulgare	Contig5537_at	Contig5537	-	-	1e-12	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please select
0.08	1e-7	59	Oryza sativa	Os10g0561300	AK068343.1	-	H(+)/MONOSACCHARIDE cotransporter	2e-5	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	5e-5	50	Triticum aestivum	Ta.12517.3.S1_x_at	CA664955	-	-	3e-10	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please select
0.05	9e-1	34	Vitis vinifera	1620670_at	CB977350	hexose transporter 7	-	7e-6	At4g02050	sugar transporter, putative	C.G.	S.X.	Please select
0.12	3e-14	79	Zea mays	ZmAffx.7.1.S1_at	AY683004.1	monosaccharide transport protein 1	-	4e-9	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage