Gene omics information

Query gene ID	PtpAffx.224499.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	64.6	PtpAffx.224499.1.S1_at	pmrna43089	hypothetical protein	-	5e-12	At5g59810	SBT5.4	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.206787.1.S1_at	pmrna13472	hypothetical protein	-	7e-2	At1g11440	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.217816.1.S1_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.203463.1.S1_at	pmrna6897	autoinhibited H+ ATPase	-	1e-44	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.209830.1.S1_at	pmrna19384	hypothetical protein	-	2e-1	At4g02810	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.225595.1.S1_s_at	pmrna45051	hypothetical protein	-	4e+0	At4g27620	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.4	99.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
21.4	99.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
8.5	98.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.5	98.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-13	79	PtpAffx.224891.1.S1_at	pmrna43802	hypothetical protein	-	3e-4	At5g59810	SBT5.4	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-9	63	PtpAffx.225375.1.S1_at	pmrna44687	hypothetical protein	-	6e-6	At5g59810	SBT5.4	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-9	63	PtpAffx.221435.1.S1_s_at	pmrna38321	hypothetical protein	-	4e-8	At5g59810	SBT5.4	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-9	63	PtpAffx.221435.1.S1_at	pmrna38321	hypothetical protein	-	4e-8	At5g59810	SBT5.4	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	3e-8	61	PtpAffx.224220.1.S1_at	pmrna42570	hypothetical protein	-	1e-3	At5g51750	ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-7	59	PtpAffx.224221.1.S1_at	pmrna42571	hypothetical protein	-	1e-3	At2g04160	AIR3	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-6	56	PtpAffx.15698.1.S1_at	BU822248	-	-	3e-5	At5g59810	SBT5.4	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-4	50	PtpAffx.97010.1.S1_s_at	BI124737	hypothetical protein	-	6e-2	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-3	46	PtpAffx.73917.1.S1_at	DN501347	-	-	6e+0	At4g22160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	5e-12	73	Arabidopsis thaliana	At5g59810	836102	SBT5.4	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	6e-28	127	Glycine max	GmaAffx.60513.1.S1_at	BQ299346	-	-	6e-7	At5g59810	SBT5.4	C.G.	S.X.	Please select
0.01	6e-1	36	Hordeum vulgare	HV_CEa0017M22f_at	HV_CEa0017M22f	-	-	1e+1	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.02	2e+0	36	Oryza sativa	Os01g0795000	AF200467.1	-	Subtilisin-like secreted protease	2e-2	At4g10510	subtilase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e+0	34	Triticum aestivum	TaAffx.7806.1.S1_at	CA649223	-	-	7e-2	At1g30473	metal ion binding	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1615810_at	CF213881	hypothetical protein LOC100256278	-	4e+0	At5g05250	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.16088.1.A1_at	CF046660	lysM receptor-like kinase	-	2e-6	At4g11480	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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