CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.224460.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.224460.1.S1_x_at pmrna43015 hypothetical protein - 6e-1 At2g38780 unknown protein S.X. H.G.
0.91 99.2 PtpAffx.220631.1.S1_at pmrna37041 hypothetical protein - 7e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.91 99.2 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase S.X. H.G.
0.91 99.2 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
0.83 97.0 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - S.X. H.G.
0.77 94.9 PtpAffx.140514.1.A1_at CV255394 - - 2e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.4 100.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.5 63.3 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.5 63.3 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.0 33.6 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.0 33.6 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.0 33.6 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0 33.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 7e-131 466 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase C.G. S.X.
0.94 2e-128 458 PtpAffx.225155.1.S1_x_at pmrna44292 hypothetical protein - 6e-1 At2g01175 unknown protein C.G. S.X.
0.17 1e-82 305 PtpAffx.225435.1.S1_x_at pmrna44784 hypothetical protein - 4e+0 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.26 6e-17 87 PtpAffx.37937.1.A1_at CV232965 - - 3e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.02 5e-2 38 PtpAffx.206634.1.S1_at pmrna13171 hypothetical protein - 1e-30 At4g33200 XI-I C.G. S.X.
0.02 5e-2 38 PtpAffx.202395.1.S1_at pmrna4809 hypothetical protein - 2e-14 At2g47240 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein C.G. S.X.
0.01 2e-1 36 PtpAffx.223280.1.S1_at pmrna41198 hypothetical protein - 8e-2 At3g22990 LFR (LEAF AND FLOWER RELATED) C.G. S.X.
0.02 2e-1 36 PtpAffx.217443.1.S1_at pmrna32700 hypothetical protein - 9e-1 At5g03050 unknown protein C.G. S.X.
0.01 2e-1 36 PtpAffx.213141.1.S1_s_at pmrna25714 hypothetical protein - 3e-1 At2g43290 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 34 Arabidopsis thaliana At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM - - - C.G. S.X.
0.07 3e+0 32 Glycine max GmaAffx.64258.1.A1_at BI968733 - - 7e+0 Atmg00120 - C.G. S.X.
0.04 5e+0 30 Hordeum vulgare Contig25295_at Contig25295 - - 1e+0 At1g21770 - C.G. S.X.
0.03 5e+0 32 Oryza sativa Os01g0818800 AK106940.1 - Hypothetical protein 2e+0 At5g39600 unknown protein C.G. S.X.
0.05 2e+0 32 Triticum aestivum Ta.8720.2.S1_x_at CD873389 - - 6e-1 At1g57730 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1613573_at CF609267 hypothetical protein LOC100260045 - 6e-33 At1g53860 remorin family protein C.G. S.X.
0.04 1e+0 32 Zea mays Zm.1380.1.A1_at BF733107 - - 2e+1 At5g28463 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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