Gene omics information

Query gene ID PtpAffx.224360.1.S1_x_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5984.9PtpAffx.224360.1.S1_x_atpmrna42826hypothetical protein-2e-42At4g23190CRK11 (CYSTEINE-RICH RLK11)S.X.H.G.
0.058.3PtpAffx.224198.1.S1_atpmrna42514glutamate-gated kainate-type ion channel receptor subunit GluR5-1e+0At2g19480NAP1S.X.H.G.
0.058.3PtpAffx.224105.1.S1_s_atpmrna42343hypothetical protein-8e-1At1g23750DNA-binding protein-relatedS.X.H.G.
0.046.9PtpAffx.6105.4.S1_atCV266789hypothetical protein-7e-2At3g48890ATMP2S.X.H.G.
0.000.4PtpAffx.218440.1.S1_atpmrna34052cytochrome P450-4e-2At5g36110CYP716A1S.X.H.G.
0.000.4PtpAffx.224186.1.S1_atpmrna42489tir-nbs-lrr resistance protein-5e-2At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.699.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.898.7GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
5.597.1GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.296.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
4.395.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
4.295.6GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.293.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.992.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9502000PtpAffx.224368.1.S1_x_atpmrna42836hypothetical protein-5e-49At4g11530kinaseC.G.S.X.
0.5501322PtpAffx.224362.1.S1_s_atpmrna42829hypothetical protein-2e-3At5g19810proline-rich extensin-like family proteinC.G.S.X.
0.8301193PtpAffx.224359.1.S1_atpmrna42825hypothetical protein-1e-8At4g23130CRK5 (CYSTEINE-RICH RLK5)C.G.S.X.
0.480942PtpAffx.3261.1.S1_s_atDN491640hypothetical protein-2e-17At4g23190CRK11 (CYSTEINE-RICH RLK11)C.G.S.X.
0.366e-111402PtpAffx.225585.1.S1_atpmrna45035hypothetical protein-2e-8At4g23230protein kinase family proteinC.G.S.X.
0.151e-40169PtpAffx.224701.1.S1_s_atpmrna43508hypothetical protein-6e-11At4g23180CRK10 (CYSTEINE-RICH RLK10)C.G.S.X.
0.126e-40167Ptp.7483.1.S1_atBU815242hypothetical protein-9e-5At4g05200protein kinase family proteinC.G.S.X.
0.144e-38161PtpAffx.225170.1.S1_atpmrna44316hypothetical protein-7e-11At4g23180CRK10 (CYSTEINE-RICH RLK10)C.G.S.X.
0.143e-29131PtpAffx.224707.1.S1_atpmrna43514hypothetical protein-3e-12At4g21410protein kinase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.192e-42174Arabidopsis thalianaAt4g23190828418CRK11 (CYSTEINE-RICH RLK11)Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)---C.G.S.X.
0.351e-53212Glycine maxGma.17797.1.S1_atCD416100--3e-12At4g23180CRK10 (CYSTEINE-RICH RLK10)C.G.S.X.
0.078e-342Hordeum vulgareContig25378_atContig25378--9e-18At4g21390B120C.G.S.X.
0.071e-759Oryza sativaOs.26323.1.S1_at---0C.G.S.X.
0.051e-346Triticum aestivumTaAffx.56854.1.S1_atCA642532--7e-2At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingC.G.S.X.
0.099e-1787Vitis vinifera1612784_atCB923182hypothetical protein LOC100257888-5e-6At4g11490protein kinase family proteinC.G.S.X.
0.031e-138Zea maysZm.16280.1.A1_atCO527119receptor-like kinase-4e-13At4g21390B120C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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