Gene omics information

Query gene ID PtpAffx.224356.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4268.6PtpAffx.224356.1.S1_s_atpmrna42822hypothetical protein-2e-11At1g65800ARK2 (A. THALIANA RECEPTOR KINASE 2)S.X.H.G.
0.6187.0PtpAffx.65682.1.S1_atBU863382hypothetical protein-2e-16At4g30980basic helix-loop-helix (bHLH) family proteinS.X.H.G.
0.5984.9PtpAffx.139389.1.S1_atCK115628hypothetical protein-1e+0At3g23220DNA binding / transcription factorS.X.H.G.
0.5078.6PtpAffx.43752.1.A1_atCK090625hypothetical protein-1e-7At1g78310VQ motif-containing proteinS.X.H.G.
0.5078.6Ptp.6336.1.S1_s_atCF231314hypothetical protein-3e-7At3g52040unknown proteinS.X.H.G.
0.4875.4PtpAffx.99333.2.S1_a_atCK100329hypothetical protein-2e-35At1g09420G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)S.X.H.G.
0.4369.7PtpAffx.222976.1.S1_atpmrna40727hypothetical protein-2e-51At5g45560pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinS.X.H.G.
0.3559.7PtpAffx.219754.1.S1_atpmrna35801hypothetical protein-1e-14At3g09760zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3255.2PtpAffx.122051.1.S1_s_atAJ774869hypothetical protein-3e-4At1g02860NLA (nitrogen limitation adaptation)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
27.799.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
11.799.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.798.3GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.694.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.594.3GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.193.2GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.992.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.088.0GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
1.684.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.5901162PtpAffx.224352.1.S1_s_atpmrna42818hypothetical protein-6e-10At4g21410protein kinase family proteinC.G.S.X.
0.560878PtpAffx.224697.1.S1_atpmrna43504hypothetical protein-4e-12At4g21410protein kinase family proteinC.G.S.X.
0.188e-27123PtpAffx.203717.1.S1_s_atpmrna7353hypothetical protein-9e-1At5g57240ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)C.G.S.X.
0.071e-1379PtpAffx.224625.1.S1_atpmrna43344hypothetical protein-2e-8At4g23190CRK11 (CYSTEINE-RICH RLK11)C.G.S.X.
0.042e-965PtpAffx.225230.1.S1_atpmrna44421hypothetical protein-4e-19At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingC.G.S.X.
0.082e-965PtpAffx.224695.1.S1_atpmrna43500hypothetical protein-1e-5At4g04500protein kinase family proteinC.G.S.X.
0.082e-965PtpAffx.224695.1.S1_s_atpmrna43500hypothetical protein-1e-5At4g04500protein kinase family proteinC.G.S.X.
0.112e-965PtpAffx.224694.1.S1_atpmrna43498hypothetical protein-4e-6At4g11530kinaseC.G.S.X.
0.076e-963PtpAffx.224772.1.S1_atpmrna43614hypothetical protein-5e-6At1g11410S-locus protein kinase, putativeC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-1171Arabidopsis thalianaAt1g65800842891ARK2 (A. THALIANA RECEPTOR KINASE 2)encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.---C.G.S.X.
0.096e-344Glycine maxGmaAffx.64035.1.S1_atBI497646--7e-12At4g04540protein kinase family proteinC.G.S.X.
0.055e-756Hordeum vulgareContig13418_atContig13418--1e-4At1g65790ARK1 (A. THALIANA RECEPTOR KINASE 1)C.G.S.X.
0.042e-346Oryza sativaOs04g0634500AK071656.1-KI domain interacting kinase 11e-5At4g03230ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingC.G.S.X.
0.031e-346Triticum aestivumTa.20980.1.S1_atCA609028--2e-5At1g11280S-locus protein kinase, putativeC.G.S.X.
0.253e-47188Vitis vinifera1611358_atCD006705--9e-8At1g61370S-locus lectin protein kinase family proteinC.G.S.X.
0.031e-138Zea maysZm.359.1.S1_atU82481.1kinase interacting kinase1-2e-6At3g16030CES101 (CALLUS EXPRESSION OF RBCS 101)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage