Gene omics information

Query gene ID	PtpAffx.224314.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.224314.1.S1_at	pmrna42754	hypothetical protein	-	4e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.45649.1.S1_at	CK090925	hypothetical protein	-	3e-1	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.201566.1.S1_s_at	pmrna3072	hypothetical protein	-	2e+0	At3g14210	ESM1 (epithiospecifier modifier 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.80839.1.S1_at	CV267772	hypothetical protein	-	7e-60	At4g24160	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.201062.1.S1_at	pmrna2096	hypothetical protein	-	3e-61	At3g26932	DRB3 (dsRNA-binding protein 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.3704.1.S1_at	CV254514	hypothetical protein	-	4e-64	At5g54960	PDC2 (pyruvate decarboxylase-2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.0	98.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.3	98.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	928	PtpAffx.45649.1.S1_at	CK090925	hypothetical protein	-	3e-1	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.49	2e-117	422	PtpAffx.76893.1.A1_at	CV245861	hypothetical protein	-	9e-2	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	9e-80	297	PtpAffx.128588.1.S1_at	CX179215	hypothetical protein	-	3e-1	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	4e-54	212	PtpAffx.94784.1.A1_at	CV271800	-	-	1e+0	At4g33920	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	5e-4	46	PtpAffx.224180.1.S1_at	pmrna42478	hypothetical protein	-	1e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	Ptp.4080.1.A1_s_at	CV239227	hypothetical protein	-	9e-9	At5g60340	maoC-like dehydratase domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.25334.1.S1_at	CV258568	hypothetical protein	-	3e-15	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.25334.1.S1_a_at	CV258568	hypothetical protein	-	3e-15	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.7213.1.S1_at	CV233028	hypothetical protein	-	4e-1	At1g30280	heat shock protein binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-4	46	Arabidopsis thaliana	At5g13200	831159	GRAM domain-containing protein / ABA-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	4e-5	50	Glycine max	GmaAffx.46603.1.S1_at	BM527724	-	-	4e-5	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.11	1e-5	50	Hordeum vulgare	HC112E03_T3_s_at	HC112E03_T3	ABA-responsive protein	-	1e-3	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os06g0218100	AK058667.1	-	Hypothetical protein	2e-3	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-1	36	Triticum aestivum	TaAffx.132322.1.S1_at	CK212886	-	-	8e-6	At5g23350	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.05	7e+0	30	Vitis vinifera	1622752_at	CF214629	hypothetical protein LOC100242373	-	1e+0	At1g12663	-	C.G.	S.X.	Please select
0.04	6e-1	34	Zea mays	Zm.10778.2.A1_at	BQ539551	-	-	3e-6	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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