CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.224250.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.224250.1.S1_at pmrna42635 hypothetical protein - 1e-12 At1g01340 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) S.X. H.G.
0.57 84.2 PtpAffx.224876.1.S1_at pmrna43777 hypothetical protein - 3e-25 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) S.X. H.G.
0.55 82.2 PtpAffx.1195.1.S1_at CV240980 hypothetical protein - 5e-1 At1g48830 40S ribosomal protein S7 (RPS7A) S.X. H.G.
0.55 82.2 PtpAffx.203973.1.S1_at pmrna7836 hypothetical protein - 4e-41 At3g03380 DegP7 (DegP protease 7) S.X. H.G.
0.50 78.6 PtpAffx.212675.1.S1_at pmrna24792 hypothetical protein - 2e-2 At4g31000 calmodulin-binding protein S.X. H.G.
0.29 50.5 PtpAffx.212675.1.S1_s_at pmrna24792 hypothetical protein - 2e-2 At4g31000 calmodulin-binding protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.1 99.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.2 98.1 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.9 97.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0 95.3 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9 95.1 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.89 0 1782 PtpAffx.224876.1.S1_at pmrna43777 hypothetical protein - 3e-25 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.25 3e-26 121 PtpAffx.210241.1.S1_at pmrna20163 hypothetical protein - 1e-28 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.10 1e-7 59 PtpAffx.158454.2.S1_at CV236636 hypothetical protein - 1e-7 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) C.G. S.X.
0.02 2e-6 56 PtpAffx.225079.1.S1_at pmrna44172 hypothetical protein - 5e-24 At4g30360 ATCNGC17 C.G. S.X.
0.18 6e-6 54 PtpAffx.158454.1.S1_s_at BP929887 hypothetical protein - 1e-18 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.06 2e-3 46 PtpAffx.5963.1.S1_s_at CV243600 hypothetical protein - 7e-112 At2g23980 ATCNGC6 C.G. S.X.
0.06 2e-3 46 PtpAffx.5963.1.S1_at CV243600 hypothetical protein - 7e-112 At2g23980 ATCNGC6 C.G. S.X.
0.04 2e-3 46 PtpAffx.224321.1.S1_at pmrna42768 hypothetical protein - 1e-58 At1g19780 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) C.G. S.X.
0.02 1e-1 40 PtpAffx.225405.1.S1_at pmrna44730 hypothetical protein - 1e-49 At1g19780 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-12 75 Arabidopsis thaliana At1g01340 838832 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) member of Cyclic nucleotide gated channel family - - - C.G. S.X.
0.16 7e-9 63 Glycine max GmaAffx.51351.1.S1_at BQ297066 - - 7e-20 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.09 6e-7 56 Hordeum vulgare Contig14052_at Contig14052 - - 4e-10 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.09 4e-8 61 Oryza sativa Os02g0255000 AK112041.1 - Cyclic nucleotide-gated ion channel 1 (AtCNGC1)(Cyclic nucleotide-and calmodulin-regulated ion channel1) 2e-6 At3g48010 ATCNGC16 C.G. S.X.
0.08 5e-6 54 Triticum aestivum TaAffx.77794.1.S1_at CA742726 - - 8e-11 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.07 4e-25 115 Vitis vinifera 1613268_at CB342482 hypothetical protein LOC100260148 - 2e-3 At3g48010 ATCNGC16 C.G. S.X.
0.01 2e+0 34 Zea mays Zm.12609.1.S1_at BU050423 - - 1e+0 At4g21970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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