Gene omics information

Query gene ID PtpAffx.224198.1.S1_at
Gene name glutamate-gated kainate-type ion channel receptor subunit GluR5
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4067.0PtpAffx.224198.1.S1_atpmrna42514glutamate-gated kainate-type ion channel receptor subunit GluR5-1e+0At2g19480NAP1S.X.H.G.
0.4067.0PtpAffx.41708.1.S1_atCV279789--1e-4At3g22560GCN5-related N-acetyltransferase (GNAT) family proteinS.X.H.G.
0.2950.5PtpAffx.224168.1.S1_s_atpmrna42446hypothetical protein-4e-8At1g08440-S.X.H.G.
0.2034.6Ptp.7371.1.S1_atDN495229--3e+0At2g17960unknown proteinS.X.H.G.
0.1118.1PtpAffx.213426.1.S1_atpmrna26254hypothetical protein-1e-1At3g26770short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
0.069.8Ptp.5756.2.S1_atCV257200--1e-31At3g54840ARA6S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.599.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
11.699.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
5.497.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.791.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
2.590.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
2.590.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
2.289.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.188.6GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.886.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
1.785.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.408e-43176PtpAffx.224195.1.S1_atpmrna42511glutamate-gated kainate-type ion channel receptor subunit GluR5-5e-3At4g35290GLUR2 (GLUTAMATE RECEPTOR 2)C.G.S.X.
0.358e-43176PtpAffx.201320.1.S1_x_atpmrna2622glutamate-gated kainate-type ion channel receptor subunit GluR5-3e-1At1g17400unknown proteinC.G.S.X.
0.332e-40169PtpAffx.201322.1.S1_x_atpmrna2624glutamate-gated kainate-type ion channel receptor subunit GluR5-4e-1At1g17400unknown proteinC.G.S.X.
0.123e-33145PtpAffx.8920.1.S1_atDN485675--4e-1At4g17998unknown proteinC.G.S.X.
0.094e-20101PtpAffx.224196.1.S1_x_atpmrna42512glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5-3e-1At3g26420ATRZ-1AC.G.S.X.
0.094e-20101PtpAffx.224196.1.S1_s_atpmrna42512glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5-3e-1At3g26420ATRZ-1AC.G.S.X.
0.011e-450PtpAffx.212421.1.S1_atpmrna24329glutamate-gated kainate-type ion channel receptor subunit GluR5-1e+0At5g53330-C.G.S.X.
0.013e-242PtpAffx.215527.1.S1_atpmrna29778hypothetical protein-1e-35At3g08910DNAJ heat shock protein, putativeC.G.S.X.
0.011e-140PtpAffx.221294.1.S1_atpmrna38076hypothetical protein-9e-14At4g09620-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.011e+036Arabidopsis thalianaAt2g19480816467NAP1This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.---C.G.S.X.
0.015e-138Glycine maxGma.5113.1.S1_s_atBI971033--5e-1At5g06060tropinone reductase, putative / tropine dehydrogenase, putativeC.G.S.X.
0.013e+034Hordeum vulgareContig21173_atContig21173--3e-23At2g35190NPSN11 (NOVEL PLANT SNARE 11)C.G.S.X.
0.016e-138Oryza sativaOs03g0212400AK064327.1-SNAP25 homologous protein SNAP33 (AtSNAP33)(Synaptosomal-associated protein SNAP25-like 1) (SNAP-25like protein 1) (Snap25a)3e-3At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)C.G.S.X.
0.015e+034Triticum aestivumTaAffx.55455.1.S1_atCA665775--1e+1At3g43572unknown proteinC.G.S.X.
0.013e-240Vitis vinifera1607908_atCF372696hypothetical protein LOC100253804-4e-3At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinC.G.S.X.
0.012e+034Zea maysZm.16624.1.A1_s_atCF645889hypothetical protein LOC100272904-8e+0Atcg00160-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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