CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.22410.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.22410.1.S1_at CV272742 hypothetical protein - 5e-29 At3g02290 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.77 94.9 PtpAffx.145060.1.A1_at CV249802 hypothetical protein - 3e-23 At4g35500 protein kinase family protein S.X. H.G.
0.71 92.6 Ptp.3882.1.S1_at CV264407 hypothetical protein - 2e-19 At5g47120 ATBI1 (BAX INHIBITOR 1) S.X. H.G.
0.47 74.6 PtpAffx.10648.1.S1_a_at CN519395 hypothetical protein - 8e-74 At3g05580 serine/threonine protein phosphatase, putative S.X. H.G.
0.42 68.6 Ptp.6966.1.S1_s_at CV239698 - - 4e-14 At5g14030 translocon-associated protein beta (TRAPB) family protein S.X. H.G.
0.40 67.0 Ptp.1463.3.A1_s_at CV263405 hypothetical protein - 1e-4 At4g19200 proline-rich family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 96.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-14 81 PtpAffx.31135.1.A1_at CV231602 hypothetical protein - 2e-6 At3g02290 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e-12 75 Ptp.5639.1.S1_at CV257667 hypothetical protein - 3e-9 At5g38895 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-4 48 PtpAffx.203385.1.S1_at pmrna6731 hypothetical protein - 1e-2 At5g15790 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 5e-2 40 PtpAffx.108714.1.A1_at CV228893 hypothetical protein - 5e-7 At5g38895 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.7307.1.S1_at CK091386 hypothetical protein - 4e-52 At1g30960 GTP-binding protein (ERG) C.G. S.X.
0.02 8e-1 36 PtpAffx.83575.1.S1_at CV131101 hypothetical protein - 2e+0 At4g00234 - C.G. S.X.
0.02 8e-1 36 PtpAffx.26596.1.S1_at CK090826 - - 3e+0 At5g52670 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 8e-1 36 PtpAffx.203527.1.S1_at pmrna7009 autoinhibited calcium ATPase - 9e-27 At2g41560 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) C.G. S.X.
0.02 3e+0 34 PtpAffx.66060.1.A1_at DN488167 - - 6e-1 At4g18150 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 5e-29 129 Arabidopsis thaliana At3g02290 821179 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFVB - - - C.G. S.X.
0.36 9e-41 169 Glycine max GmaAffx.43513.1.S1_at AW099493 - - 3e-27 At3g02290 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.10 8e-8 57 Hordeum vulgare rbaal29b24_at rbaal29b24 - - 1e-6 At5g15790 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 8e-5 50 Oryza sativa Os03g0598700 AK108026.1 - Zn-finger, RING domain containing protein 2e-7 At5g38895 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 4e-8 59 Triticum aestivum TaAffx.76633.1.S1_at CK162934 - - 8e-10 At3g02290 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.15 1e-17 89 Vitis vinifera 1618199_at CD802229 hypothetical protein LOC100247128 - 7e-8 At5g15790 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.08 8e-14 77 Zea mays Zm.12470.1.A1_at CN844304 protein binding protein - 2e-13 At5g38895 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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