Gene omics information

Query gene ID	PtpAffx.224088.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	80.8	PtpAffx.224088.1.S1_s_at	pmrna42325	hypothetical protein	-	3e-1	At1g10747	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.18211.1.A1_at	CV257248	hypothetical protein	-	9e-2	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.33045.1.A1_at	CK089245	-	-	5e+0	At2g29045	LCR62 (Low-molecular-weight cysteine-rich 62)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.26228.1.S1_at	CK097094	AP2/ERF domain-containing transcription factor	-	2e-2	At2g31230	ATERF15 (Ethylene-responsive element binding factor 15)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.101690.1.A1_at	CV255238	-	-	9e-1	At5g41401	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.42652.1.S1_at	CV268229	histone H3	-	1e-1	At1g01370	HTR12	S.X.	H.G.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.211939.1.S1_at	pmrna23444	hypothetical protein	-	1e-37	At2g04280	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.29085.1.A1_s_at	DN489411	-	-	4e+0	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.87978.1.S1_s_at	CX170242	leucine-rich repeat protein kinase	-	1e-38	At5g62230	ERL1 (ERECTA-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.222091.1.S1_x_at	pmrna39304	hypothetical protein	-	5e-26	Atcg00660	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.4	99.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6	96.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	724	PtpAffx.200604.1.S1_x_at	pmrna1188	hypothetical protein	-	3e-1	At1g10747	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.72	0	724	PtpAffx.200604.1.S1_at	pmrna1188	hypothetical protein	-	3e-1	At1g10747	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	4e-112	404	PtpAffx.205435.1.S1_at	pmrna10746	hypothetical protein	-	3e-3	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	3e-63	242	PtpAffx.224077.1.S1_s_at	pmrna42314	hypothetical protein	-	2e-1	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	8e-18	91	PtpAffx.212608.1.S1_at	pmrna24686	hypothetical protein	-	5e-1	At3g23130	SUP (SUPERMAN)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	3e-11	69	PtpAffx.206492.1.S1_at	pmrna12881	hypothetical protein	-	8e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	1e-7	57	PtpAffx.210433.1.S1_at	pmrna20486	hypothetical protein	-	3e-1	At3g56030	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	7e-6	52	PtpAffx.200636.1.S1_at	pmrna1237	hypothetical protein	-	8e-1	At3g27570	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	7e-6	52	PtpAffx.200636.1.S1_x_at	pmrna1237	hypothetical protein	-	8e-1	At3g27570	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At1g10747	5007680	-	Encodes a Maternally expressed gene (MEG) family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	GmaAffx.38430.1.S1_at	CA936241	-	-	6e-2	At5g18420	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HT01A09w_at	HT01A09w	-	-	5e+0	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	C.G.	S.X.	Please select
Os06g0342850	0.03	9e+0	Oryza sativa	Os06g0342825	9634.m02317	-	-	1e+0	At4g36750	quinone reductase family protein	C.G.	S.X.	Please select
0.05	2e-2	40	Triticum aestivum	TaAffx.103305.2.S1_at	CA625275	-	-	2e-2	At5g61590	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1609274_at	CF405813	-	-	3e+0	At4g08028	-	C.G.	S.X.	Please select
0.03	3e-2	38	Zea mays	Zm.14951.1.S1_x_at	M36914.1	cell wall protein (put.); putative	-	5e-3	At2g30370	allergen-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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