Gene omics information

Query gene ID	PtpAffx.224082.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	92.7	PtpAffx.224082.1.S1_x_at	pmrna42319	hypothetical protein	-	1e-2	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.74	93.8	PtpAffx.219164.1.S1_at	pmrna35006	hypothetical protein	-	2e+1	Atmg00840	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.74	93.8	PtpAffx.208647.1.S1_at	pmrna17166	hypothetical protein	-	7e-7	At1g13160	SDA1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.214632.1.S1_at	pmrna28429	hypothetical protein	-	4e+0	At5g03510	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.220458.1.S1_at	pmrna36851	hypothetical protein	-	7e+0	At1g49170	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.62	87.2	PtpAffx.224029.1.S1_at	pmrna42263	hypothetical protein	-	1e+0	At5g41520	40S ribosomal protein S10 (RPS10B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.205115.1.S1_at	pmrna10125	hypothetical protein	-	8e-1	At4g32120	galactosyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.222801.1.S1_at	pmrna40461	hypothetical protein	-	5e-1	At3g22360	AOX1B	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.3190.3.A1_at	CV229036	-	-	7e-1	At1g50930	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.217474.1.S1_at	pmrna32753	hypothetical protein	-	7e+0	At3g18295	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.5	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	9e-75	280	PtpAffx.200210.1.S1_x_at	pmrna396	hypothetical protein	-	9e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	9e-75	280	PtpAffx.200210.1.S1_at	pmrna396	hypothetical protein	-	9e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	2e-17	89	PtpAffx.153433.1.A1_at	CV257246	hypothetical protein	-	3e-1	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	4e-9	61	PtpAffx.203440.1.S1_at	pmrna6858	hypothetical protein	-	3e-1	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-2	38	PtpAffx.200211.1.S1_s_at	pmrna397	hypothetical protein	-	3e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-2	38	PtpAffx.200211.1.S1_at	pmrna397	hypothetical protein	-	3e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	9e-1	34	PtpAffx.209599.1.S1_at	pmrna18984	hypothetical protein	-	6e-2	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-1	34	PtpAffx.205504.1.S1_at	pmrna10880	hypothetical protein	-	1e-1	At1g36390	co-chaperone grpE family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	32	PtpAffx.84165.1.A1_s_at	CK096674	hypothetical protein	-	2e-24	At1g19440	KCS4 (3-KETOACYL-COA SYNTHASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-2	40	Arabidopsis thaliana	At5g61030	836224	GR-RBP3 (glycine-rich RNA-binding protein 3)	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	HgAffx.3401.1.S1_at	CK349289	-	-	3e+0	At5g46530	-	C.G.	S.X.	Please select
0.03	5e+0	30	Hordeum vulgare	Contig40_x_at	Contig40	histone H3 protein	-	3e-32	At5g10980	histone H3	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os.54758.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-1	34	Triticum aestivum	TaAffx.81128.1.S1_at	CA689253	-	-	1e-2	At5g11020	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1619628_at	CF405403	hypothetical protein LOC100265808	-	3e-1	At3g15000	-	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.1294.1.S1_at	40794996-137	-	-	0	Atmg01270	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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