Gene omics information

Query gene ID	PtpAffx.224029.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.224029.1.S1_x_at	pmrna42263	hypothetical protein	-	1e+0	At5g41520	40S ribosomal protein S10 (RPS10B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.216632.1.S1_at	pmrna31543	hypothetical protein	-	2e+1	At3g30222	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.206972.1.S1_at	pmrna13819	hypothetical protein	-	6e-2	At5g49150	GEX2 (GAMETE EXPRESSED 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.95500.1.A1_at	CV243681	-	-	1e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.212467.1.S1_x_at	pmrna24427	hypothetical protein	-	4e-1	At5g26220	ChaC-like family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.209763.1.S1_at	pmrna19260	hypothetical protein	-	3e+0	At5g48945	LCR46 (Low-molecular-weight cysteine-rich 46)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.216708.1.S1_at	pmrna31662	hypothetical protein	-	4e-1	At1g01130	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.5	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4	97.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	3e-162	571	PtpAffx.224029.1.S1_at	pmrna42263	hypothetical protein	-	1e+0	At5g41520	40S ribosomal protein S10 (RPS10B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	5e-99	361	PtpAffx.200809.1.S1_x_at	pmrna1587	hypothetical protein	-	6e-1	At2g43150	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-31	137	PtpAffx.200835.1.S1_at	pmrna1626	hypothetical protein	-	1e-1	At1g77855	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-24	113	PtpAffx.200834.1.S1_x_at	pmrna1625	hypothetical protein	-	2e-1	At3g44261	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	3e-11	69	PtpAffx.249.87.A1_x_at	CV233414	-	-	9e-1	At1g32280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	4e-4	46	PtpAffx.249.640.A1_at	CV237444	hypothetical protein	-	3e-7	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.208312.1.S1_at	pmrna16531	hypothetical protein	-	2e-7	At1g27210	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	Ptp.7515.1.S1_at	CK109405	-	-	2e+0	At4g15400	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	Ptp.7515.1.S1_s_at	CK109405	-	-	2e+0	At4g15400	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g41520	834154	40S ribosomal protein S10 (RPS10B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.85885.1.S1_at	BF071059	-	-	4e-2	At5g11190	SHN3 (shine3)	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	HT09B02u_x_at	HT09B02u	-	-	1e+1	At5g48790	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	OsAffx.10637.5.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.11755.1.S1_at	BJ283635	-	-	3e-1	At2g44340	VQ motif-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1614669_at	CF513785	-	-	1e+0	At2g15390	FUT4	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.19.1.S1_at	M57249.1	phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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