Gene omics information

Query gene ID	PtpAffx.224027.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.37	62.3	PtpAffx.224027.1.S1_at	pmrna42259	hypothetical protein	-	4e+0	At5g19257	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.211210.1.S1_at	pmrna22025	hypothetical protein	-	3e+0	At3g55820	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.861.1.A1_at	CV267999	-	-	3e-1	At1g67880	glycosyl transferase family 17 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.205174.1.S1_at	pmrna10244	hypothetical protein	-	3e-1	At2g25190	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.5646.1.A1_at	CV240792	-	-	1e-1	At1g16916	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	Ptp.207.1.A1_at	CK087456	-	-	3e-3	At2g22080	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.215568.1.S1_at	pmrna29839	hypothetical protein	-	8e-1	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.207165.1.S1_at	pmrna14215	hypothetical protein	-	2e-10	At4g39440	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.7	99.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
9.9	98.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.3	98.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-12	71	PtpAffx.206341.1.S1_at	pmrna12588	hypothetical protein	-	4e-1	At2g26770	plectin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	40	PtpAffx.224149.1.S1_at	pmrna42410	tir-nbs-lrr resistance protein	-	5e-5	At5g36930	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-2	38	PtpAffx.6695.1.S1_at	CV263704	hypothetical protein	-	5e-8	At5g67090	subtilase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.4470.4.S1_a_at	CK089698	hypothetical protein	-	7e-61	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.217314.1.S1_at	pmrna32522	hypothetical protein	-	7e-16	At5g15730	serine/threonine protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.216911.1.S1_at	pmrna31978	hypothetical protein	-	5e-23	At5g15730	serine/threonine protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.214840.1.S1_s_at	pmrna28738	hypothetical protein	-	5e-1	At5g15730	serine/threonine protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.213252.1.S1_at	pmrna25920	hypothetical protein	-	8e-45	At2g41210	PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.210542.1.S1_at	pmrna20674	hypothetical protein	-	7e-122	At3g48150	APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At5g19257	6241193	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.22711.1.S1_at	BG510954	-	-	3e+0	At5g37290	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig25564_at	Contig25564	-	-	7e-1	At3g30220	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	Os10g0371800	9638.m01918	-	-	1e+0	At4g36791	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Triticum aestivum	TaAffx.5444.1.S1_at	CA710553	-	-	3e-2	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.9850.1.A1_at	BM332622	-	-	2e+0	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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