CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.223995.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.223995.1.S1_at pmrna42224 hypothetical protein - 9e-7 At5g27270 EMB976 (EMBRYO DEFECTIVE 976) S.X. H.G.
0.55 82.2 PtpAffx.221803.1.S1_at pmrna38862 hypothetical protein - 1e+1 At5g48480 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.222656.1.S1_at pmrna40203 hypothetical protein - 4e-2 At1g33340 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related S.X. H.G.
0.40 67.0 PtpAffx.37291.1.A1_at CV257552 hypothetical protein - 1e-7 At5g12350 Ran GTPase binding / chromatin binding / zinc ion binding S.X. H.G.
0.36 61.6 PtpAffx.201569.1.S1_at pmrna3080 hypothetical protein - 8e-7 At1g07380 ceramidase family protein S.X. H.G.
0.14 23.5 PtpAffx.222521.1.S1_at pmrna40018 chromatin remodeling complex subunit - 3e+0 At5g43175 basic helix-loop-helix (bHLH) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 98.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-141 502 PtpAffx.212192.1.S1_at pmrna23898 hypothetical protein - 2e-30 At5g27270 EMB976 (EMBRYO DEFECTIVE 976) C.G. S.X.
0.01 7e-2 38 PtpAffx.211103.1.S1_at pmrna21812 hypothetical protein - 1e-47 At3g03680 C2 domain-containing protein C.G. S.X.
0.02 7e-2 38 PtpAffx.203753.1.S1_at pmrna7420 hypothetical protein - 3e+0 At4g33350 chloroplast inner membrane import protein Tic22, putative C.G. S.X.
0.01 3e-1 36 PtpAffx.211102.1.S1_at pmrna21811 hypothetical protein - 8e-58 At3g03680 C2 domain-containing protein C.G. S.X.
0.03 3e-1 36 PtpAffx.15908.1.S1_at CV231912 hypothetical protein - 2e-3 At5g61750 cupin family protein C.G. S.X.
0.02 1e+0 34 PtpAffx.11077.1.A1_at CV281525 hypothetical protein - 8e-7 At5g52830 WRKY27 C.G. S.X.
0.03 5e+0 32 PtpAffx.5512.1.A1_at CV245430 hypothetical protein - 4e-1 At1g63720 - C.G. S.X.
0.03 5e+0 32 PtpAffx.50236.1.A1_at CV253545 hypothetical protein - 1e-10 At5g23300 PYRD (pyrimidine d) C.G. S.X.
0.01 5e+0 32 PtpAffx.225687.1.S1_at pmrna45221 hypothetical protein - 0 At5g66760 SDH1-1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-7 54 Arabidopsis thaliana At5g27270 832785 EMB976 (EMBRYO DEFECTIVE 976) F:unknown;P:biological_process unknown;C:chloroplast;POMFBA - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.38178.1.S1_at BU964529 - - 1e-5 At2g46520 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative C.G. S.X.
0.05 3e-5 48 Hordeum vulgare Contig26600_at Contig26600 - - 9e+0 At5g62627 - C.G. S.X.
0.02 2e+0 34 Oryza sativa Os07g0490500 AK061151.1 - Conserved hypothetical protein 4e-2 At2g27810 xanthine/uracil permease family protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.65161.1.S1_at BJ258671 - - 7e-2 At3g51410 unknown protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1616379_s_at CF510946 hypothetical protein LOC100246496 - 1e-2 At4g00560 methionine adenosyltransferase regulatory beta subunit-related C.G. S.X.
0.05 4e-1 34 Zea mays ZmAffx.483.1.A1_at AI691297 hypothetical protein LOC100279915 - 1e+1 At5g59870 HTA6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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