Gene omics information

Query gene ID	PtpAffx.223820.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	95.1	PtpAffx.223820.1.S1_at	pmrna42026	hypothetical protein	-	2e+0	At5g43513	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.6743.1.A1_at	CV245002	hypothetical protein	-	9e-9	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.4110.2.S1_s_at	AJ775375	hypothetical protein	-	2e-7	At5g48880	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.1323.1.S1_at	CK093529	hypothetical protein	-	1e-103	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.6743.1.A1_s_at	CV245002	hypothetical protein	-	9e-9	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.6462.1.S1_s_at	CF232785	3-phosphoshikimate 1-carboxyvinyltransferase	-	1e-63	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.1405.1.S1_at	CK093260	hypothetical protein	-	1e-10	At2g47590	PHR2 (photolyase/blue-light receptor 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.137659.1.S1_at	BU821425	hypothetical protein	-	3e-12	At2g21380	kinesin motor protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.4735.1.S1_at	CN523873	hypothetical protein	-	6e-6	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.1375.2.S1_a_at	BU897255	hypothetical protein	-	7e-2	At3g62580	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.0	98.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.9	97.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.8	97.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7	97.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	0	807	PtpAffx.216182.1.S1_s_at	pmrna30801	hypothetical protein	-	5e-1	At5g20060	phospholipase/carboxylesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	2e-127	456	PtpAffx.211295.1.S1_at	pmrna22149	hypothetical protein	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	1e-63	244	Ptp.2992.1.S1_at	DN486003	hypothetical protein	-	2e+0	At1g43020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	5e-54	212	PtpAffx.215251.1.S1_at	pmrna29336	hypothetical protein	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	8e-25	115	PtpAffx.211296.1.S1_s_at	pmrna22151	hypothetical protein	-	7e-1	At4g05040	ankyrin repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	2e-13	77	PtpAffx.22652.1.S1_at	BU896347	-	-	5e+0	At3g46880	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-6	54	PtpAffx.219102.1.S1_at	pmrna34921	hypothetical protein	-	4e-1	At5g02620	ankyrin repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-5	50	PtpAffx.221794.1.S1_at	pmrna38848	hypothetical protein	-	3e+0	At4g40042	peptidase	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-4	48	PtpAffx.141999.1.S1_at	CK106222	hypothetical protein	-	4e-1	At5g61410	RPE	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g43513	3771417	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.83595.1.S1_at	BM092903	-	-	8e-2	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	HY01N07u_x_at	HY01N07u	-	-	6e+0	At1g71470	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os06g0362000	9634.m02540	-	-	8e+0	At5g40630	ubiquitin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	TaAffx.121392.2.S1_at	CA623551	-	-	1e+0	At5g56550	OXS3 (OXIDATIVE STRESS 3)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1622741_at	CB343444	-	-	2e-1	At4g05040	ankyrin repeat family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.1164.1.A1_at	AW455679	-	-	3e+0	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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