CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.223169.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.223169.1.S1_at pmrna41040 hypothetical protein - 5e+0 At5g65320 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.77 94.9 PtpAffx.217817.1.S1_at pmrna33231 hypothetical protein - 2e+0 At5g47210 nuclear RNA-binding protein, putative S.X. H.G.
0.40 67.0 PtpAffx.219020.1.S1_at pmrna34810 hypothetical protein - 2e+0 At4g20520 RNA binding / RNA-directed DNA polymerase S.X. H.G.
0.33 57.5 PtpAffx.202504.1.S1_at pmrna5014 hypothetical protein - 4e+0 At4g17600 LIL3:1 S.X. H.G.
0.32 55.2 Ptp.4206.2.A1_at DN490410 - - 5e+0 At3g23490 CYN (CYANASE) S.X. H.G.
0.11 18.1 PtpAffx.206100.1.S1_s_at pmrna12087 hypothetical protein - 3e+0 At4g33580 carbonic anhydrase family protein / carbonate dehydratase family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.1 99.0 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0 92.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 32 PtpAffx.220381.1.S1_at pmrna36760 - - 3e-1 At3g55790 unknown protein C.G. S.X.
0.02 2e+0 32 PtpAffx.216051.1.S1_at pmrna30610 hypothetical protein - 4e+1 At5g50480 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) C.G. S.X.
0.01 2e+0 32 PtpAffx.206797.1.S1_s_at pmrna13493 hypothetical protein - 3e-81 At2g25430 epsin N-terminal homology (ENTH) domain-containing protein C.G. S.X.
0.04 2e+0 32 PtpAffx.205601.1.S1_at pmrna11055 hypothetical protein - 7e-5 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.03 2e+0 32 PtpAffx.13627.3.A1_at CV262512 hypothetical protein - 3e-2 At4g24026 unknown protein C.G. S.X.
0.03 2e+0 32 PtpAffx.13627.3.A1_a_at CV262512 hypothetical protein - 3e-2 At4g24026 unknown protein C.G. S.X.
0.03 2e+0 32 PtpAffx.1069.1.S1_at CX657675 hypothetical protein - 2e+0 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) C.G. S.X.
0.04 7e+0 30 PtpAffx.82948.1.A1_at CV226169 - - 4e+0 At5g11550 binding C.G. S.X.
0.05 7e+0 30 PtpAffx.223634.1.S1_x_at pmrna41717 hypothetical protein - 7e-1 At3g45673 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 30 Arabidopsis thaliana At5g65320 836657 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF - - - C.G. S.X.
0.06 5e-1 34 Glycine max HgAffx.11699.1.S1_at CB376283 - - 8e-2 At5g46620 unknown protein C.G. S.X.
0.06 2e-1 34 Hordeum vulgare HU12B19u_at HU12B19u - - 3e+0 At2g03430 ankyrin repeat family protein C.G. S.X.
0.04 7e-1 34 Oryza sativa Os09g0382300 9637.m01847 - Cyclin, C-terminal domain containing protein 1e-1 At1g70210 CYCD1 C.G. S.X.
0.06 1e+0 32 Triticum aestivum Ta.4943.3.S1_at CA629555 - - 1e+0 At1g12400 DNA binding C.G. S.X.
0.04 6e+0 28 Vitis vinifera 1618661_s_at CF518549 hypothetical protein LOC100254504 - 1e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) C.G. S.X.
0.04 4e-2 36 Zea mays Zm.18015.1.A1_at CF633784 hypothetical protein LOC100277411 - 3e-2 At5g51850 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage