CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.223154.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.223154.1.S1_at pmrna41014 hypothetical protein - 5e-3 At1g29160 Dof-type zinc finger domain-containing protein S.X. H.G.
0.14 23.5 Ptp.3943.1.S1_at CV250102 hypothetical protein - 5e-8 At5g43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
0.07 11.6 PtpAffx.40910.1.S1_at BU830361 hypothetical protein - 1e+0 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.07 11.6 Ptp.172.1.S1_s_at CV248945 hypothetical protein - 1e-32 At4g26230 60S ribosomal protein L31 (RPL31B) S.X. H.G.
0.05 8.3 Ptp.1890.1.S1_at CV263640 hypothetical protein - 1e-163 At3g13920 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) S.X. H.G.
0.04 6.9 Ptp.5692.1.S1_s_at CV266749 hypothetical protein - 2e-59 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.0 99.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.81 4e-165 581 PtpAffx.202153.1.S1_s_at pmrna4305 hypothetical protein - 2e-1 At2g39445 - C.G. S.X.
0.35 4e-134 478 PtpAffx.220851.1.S1_at pmrna37301 hypothetical protein - 7e-9 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) C.G. S.X.
0.35 5e-81 301 PtpAffx.210962.1.S1_s_at pmrna21538 hypothetical protein - 3e-2 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.28 1e-60 234 PtpAffx.212128.1.S1_x_at pmrna23787 hypothetical protein - 1e-1 At2g39445 - C.G. S.X.
0.23 8e-46 184 PtpAffx.221719.1.S1_at pmrna38748 hypothetical protein - 9e-1 At5g35100 peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.18 3e-39 163 PtpAffx.212326.1.S1_at pmrna24170 hypothetical protein - 4e-1 At2g21530 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.26 3e-36 153 PtpAffx.210327.1.S1_x_at pmrna20318 hypothetical protein - 1e+1 At5g07330 unknown protein C.G. S.X.
0.15 3e-27 123 PtpAffx.212130.1.S1_x_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein C.G. S.X.
0.15 3e-27 123 PtpAffx.212130.1.S1_at pmrna23790 hypothetical protein - 6e-1 At3g13677 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 42 Arabidopsis thaliana At1g29160 839790 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO - - - C.G. S.X.
0.07 3e-2 40 Glycine max Gma.9131.1.A1_at CA818921 - - 1e+0 At2g36180 calmodulin-related protein, putative C.G. S.X.
0.06 3e-6 52 Hordeum vulgare Contig7972_at Contig7972 - - 7e+0 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) C.G. S.X.
0.05 1e-2 42 Oryza sativa OsAffx.2531.1.S1_at - - - 0 C.G. S.X.
0.09 2e-2 40 Triticum aestivum TaAffx.50923.1.S1_at CA733414 - - 3e-1 At5g03030 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.07 2e-3 42 Vitis vinifera 1614311_at CF516097 hypothetical protein LOC100264243 - 2e-6 At1g15780 unknown protein C.G. S.X.
0.04 9e-3 40 Zea mays Zm.17848.1.A1_s_at CK786759 hypothetical protein LOC100279789 - 2e+1 At5g27980 seed maturation family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage